Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | CDX67680 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | CDY25279 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | CDY33839 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | CDY50671 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15463 | Canola | nucleus | 52.94 | 65.31 |
| CDY64129 | Canola | nucleus | 42.47 | 41.81 |
| AT1G03530.1 | Thale cress | nucleus | 44.76 | 38.95 |
| KRH25503 | Soybean | nucleus | 25.97 | 31.75 |
| KRH56025 | Soybean | mitochondrion, nucleus | 16.07 | 30.68 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 23.24 | 27.5 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 27.55 | 27.04 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 20.37 | 26.49 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 22.81 | 26.46 |
| PGSC0003DMT400047290 | Potato | nucleus | 27.4 | 25.71 |
| Os05t0502800-01 | Rice | nucleus | 24.53 | 25.11 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 22.96 | 25.04 |
| Solyc07g054460.2.1 | Tomato | nucleus | 26.97 | 24.16 |
| HORVU6Hr1G056850.1 | Barley | plastid | 22.96 | 22.96 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 22.67 | 22.73 |
| EES19773 | Sorghum | nucleus | 23.82 | 22.71 |
| Zm00001d038622_P001 | Maize | plastid | 23.1 | 21.44 |
| TraesCS1A01G322700.1 | Wheat | plastid | 24.82 | 19.77 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 25.68 | 19.37 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 25.25 | 18.99 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 24.39 | 18.91 |
Protein Annotations
| EnsemblPlants:CDY51392 | EnsemblPlantsGene:GSBRNA2T00003319001 | Gene3D:2.40.10.230 | GO:A0A078IN79 | GO:GO:0001522 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 |
| InterPro:IPR038664 | InterPro:Transl_B-barrel_sf | PFAM:PF04410 | ProteinID:CDY51392 | ProteinID:CDY51392.1 | SEG:seg |
| SUPFAM:SSF50447 | UniParc:UPI0004EF344B | UniProt:A0A078IN79 | MapMan:17.1.1.2.2.1.4 | : | : |
Description
BnaC08g46290DBnaC08g46290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN79]
Coordinates
chrLK032991:+:64499..66901
Molecular Weight (calculated)
77876.1 Da
IEP (calculated)
4.114
GRAVY (calculated)
-0.687
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFAVKPGL KEEEELPVVE AIKDFPPIDS YLDFDSSNWL GSNNSNIEEE FSLEDTDFDF FEEHMEIGQE GVTVSEETRT LVSESIEVTS KLCCGVSGVS
101: SISSESVIDV KPLLCGGMSA NFGGVAEPAV KESEPVVSKV SRPMEDDKGE TSSAESESET SSSSSSSSAS SSIDEEESNK EKKFEDQMVM GKEDDMAEEL
201: EEGEIRSVDE EHEAEEDDVN EMVAWSNDED EDLGWQTNEP IRINNELKEL PPVPPVDVTL EPHHVMLPVG VVLSVLSTPL TQVIVEGMEK HSPLAEGSIL
301: WISERRTPLG LVDEIFAQVE CPYYSVRFNS ENEVPEGVSE GTPVSFVAEY AQHILNIKEL QKKGYDASGD NDEEVAEELE FSDDEKEAEY IKMQKMEKRG
401: MMDDQKDGNA RNKKKKNNDL GTSTSNDSGE WTENRGFSSL SSNRSDPQMG DPPRPQMVGF PPNGGGWRPQ SNQQNSHQFP PMPSQIAIPN LPPPMQRPMM
501: AMQNQMMFRP QFNGAQLPMP AGPGGLNFFQ GQATAPWPAL VGQNCFNQQP FGMGRGIQPP QLLNELIVNL LASQGLQMLN NRPQSPMNPQ LQMQPQFPMN
601: PQFQMAEQQA TFPMNPQFQM LNNNRPQSPM NPHFQMQPQF PMNPQFQMLN NNRPQSQGFN AGKSSERGKG PPWSWQRYIL MCVKSMFYLV LYAKFLW
101: SISSESVIDV KPLLCGGMSA NFGGVAEPAV KESEPVVSKV SRPMEDDKGE TSSAESESET SSSSSSSSAS SSIDEEESNK EKKFEDQMVM GKEDDMAEEL
201: EEGEIRSVDE EHEAEEDDVN EMVAWSNDED EDLGWQTNEP IRINNELKEL PPVPPVDVTL EPHHVMLPVG VVLSVLSTPL TQVIVEGMEK HSPLAEGSIL
301: WISERRTPLG LVDEIFAQVE CPYYSVRFNS ENEVPEGVSE GTPVSFVAEY AQHILNIKEL QKKGYDASGD NDEEVAEELE FSDDEKEAEY IKMQKMEKRG
401: MMDDQKDGNA RNKKKKNNDL GTSTSNDSGE WTENRGFSSL SSNRSDPQMG DPPRPQMVGF PPNGGGWRPQ SNQQNSHQFP PMPSQIAIPN LPPPMQRPMM
501: AMQNQMMFRP QFNGAQLPMP AGPGGLNFFQ GQATAPWPAL VGQNCFNQQP FGMGRGIQPP QLLNELIVNL LASQGLQMLN NRPQSPMNPQ LQMQPQFPMN
601: PQFQMAEQQA TFPMNPQFQM LNNNRPQSPM NPHFQMQPQF PMNPQFQMLN NNRPQSQGFN AGKSSERGKG PPWSWQRYIL MCVKSMFYLV LYAKFLW
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.