CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY15463
CDY51392

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	CDY15463	AT1G03530.1	17712600
AT3G57150.1	CDY51392	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25279	Canola	cytosol	97.91	97.91
CDY33839	Canola	cytosol	87.45	88.29
CDX67680	Canola	cytosol	87.45	84.1
AT3G57150.1	Thale cress	cytosol	80.61	75.04
Os04t0576300-01	Rice	nucleus, plastid	27.38	72.36
TraesCS2D01G156900.1	Wheat	cytosol	70.91	70.38
Os11t0598700-00	Rice	mitochondrion	26.81	69.8
PGSC0003DMT400018869	Potato	cytosol	75.1	68.94
TraesCS2D01G157000.1	Wheat	nucleus	71.86	67.99
VIT_08s0007g00190.t01	Wine grape	cytosol	73.76	66.21
Solyc02g081810.2.1	Tomato	nucleus	73.57	64.82
Zm00001d008327_P001	Maize	plasma membrane	71.67	64.67
KRH43875	Soybean	nucleus	71.1	64.48
EES02707	Sorghum	cytosol	71.48	64.38
KRH10580	Soybean	nucleus	71.67	64.01
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	70.15	63.73
EER99769	Sorghum	cytosol, nucleus, plastid	70.91	63.65
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	69.77	62.95
TraesCS2B01G177000.1	Wheat	nucleus	72.62	62.93
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	72.24	62.81
Os03t0370500-02	Rice	nucleus	70.53	62.77
Os07t0636000-01	Rice	nucleus	71.48	62.67
TraesCS2A01G151800.1	Wheat	cytosol	72.43	62.66
GSMUA_Achr11P...	Banana	cytosol	59.89	62.13
GSMUA_Achr11P...	Banana	nucleus	69.58	57.46
HORVU2Hr1G027370.1	Barley	cytosol	63.88	52.34
HORVU2Hr1G027400.5	Barley	plastid	63.69	49.05
GSMUA_Achr8P15080_001	Banana	nucleus	61.03	36.81
CDY09856	Canola	plastid	6.65	6.88
CDX69580	Canola	plastid	5.89	6.8

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	GO:A0A078IKX0	UniProt:A0A078IKX0	EnsemblPlants:CDY50671
ProteinID:CDY50671	ProteinID:CDY50671.1	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00097230001
InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136
SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	InterPro:TruB_C	UniParc:UPI0004EE1282	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

BnaC02g46780DBnaC02g46780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKX0]

Coordinates

chrLK032930:+:6232..8105

Molecular Weight (calculated)

58726.8 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.682

Length

526 amino acids

Sequence
(BLAST)

001: MTEVEEVAAE TGDYMIKPQS FTPAIDTSQW PLLLKNYDRL NVRTGHYTPI SSGHSPLKRP LLDYIRYGVI NLDKPSNPSS HEVVAWIKRI LRVEKTGHSG
101: TLDPKVTGNL IVCIDRATRL VKSQQGAGKE YVCVARLHSA VPDVAKVARA LESLTGAVFQ RPPLISAVKR QLRIRTIYQS KLLEYDADRH LVVFWVSCEA
201: GTYIRTMCVH LGLLLGVGGH MQELRRVRSG ILGENDNMVT MHDVMDAQWM YDNHKDESYL RRVIMPLEVI LTSYKRLVVK DSAVNAICYG AKLMIPGLLR
301: FENDIDVGTE VVLMTTKGEA IAIKRVVMDR DTYPRKWGLG PRASMKKKLI ADGKLDKHGK PNEKTPLEWS RNVVVLPTGG DAMIAGAAAA PEGKVEAESG
401: QVRKRKHDDS TDTPAPVSTK KAKTKDLEGG EVEEKKKEKK KKKDKEEDKE ELATPKSEKK KKKKSKEADE AAAANGEDES AAEKSEKKKK KKSKETDEAA
501: ACQSAEKSEK KKKKDKKKKT KDSDDE

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.