Factsheet for Os03t0370500-02

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134
nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0502800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Os05t0502800-01	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G156900.1	Wheat	cytosol	76.31	85.09
Os07t0636000-01	Rice	nucleus	84.09	82.83
TraesCS2D01G157000.1	Wheat	nucleus	76.48	81.3
EER99769	Sorghum	cytosol, nucleus, plastid	79.7	80.38
Os04t0576300-01	Rice	nucleus, plastid	26.73	79.4
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	77.67	78.73
TraesCS2B01G177000.1	Wheat	nucleus	79.53	77.43
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	79.19	77.36
Os11t0598700-00	Rice	mitochondrion	26.4	77.23
TraesCS2A01G151800.1	Wheat	cytosol	79.36	77.14
Bra003270.1-P	Field mustard	cytosol	65.82	71.12
CDX67680	Canola	cytosol	65.48	70.75
CDY25279	Canola	cytosol	62.94	70.72
CDY33839	Canola	cytosol	62.27	70.63
CDY50671	Canola	cytosol	62.77	70.53
AT3G57150.1	Thale cress	cytosol	66.67	69.73
GSMUA_Achr11P...	Banana	cytosol	59.73	69.63
VIT_08s0007g00190.t01	Wine grape	cytosol	68.7	69.28
KRH43875	Soybean	nucleus	67.68	68.97
KRH10580	Soybean	nucleus	68.02	68.25
PGSC0003DMT400018869	Potato	cytosol	65.99	68.06
Bra033149.1-P	Field mustard	cytosol	62.77	67.82
GSMUA_Achr11P...	Banana	nucleus	71.4	66.25
Solyc02g081810.2.1	Tomato	nucleus	66.33	65.66
HORVU2Hr1G027370.1	Barley	cytosol	67.17	61.84
HORVU2Hr1G027400.5	Barley	plastid	67.01	57.98
GSMUA_Achr8P15080_001	Banana	nucleus	59.73	40.48

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	EntrezGene:4332935	ProteinID:AAG46137.1	ProteinID:ABF96174.1
EMBL:AK063289	ProteinID:BAF12113.1	ProteinID:BAS84362.1	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0000495
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
GO:GO:0031118	GO:GO:0031120	GO:GO:0031429	GO:GO:1990481	InterPro:IPR002478	EnsemblPlantsGene:Os03g0370500
EnsemblPlants:Os03t0370500-02	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	UniProt:Q10KT9
SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451
InterPro:TruB_C	UniParc:UPI00000A7C3B	InterPro:Uncharacterised_CHP00451	RefSeq:XP_015630709.1	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam

Description

Similar to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140 associated protein of 57 kDa homolog) (AtNAP57). (Os03t0370500-02)

Coordinates

chr3:+:14545715..14547899

Molecular Weight (calculated)

64812.0 Da

IEP (calculated)

9.850

GRAVY (calculated)

-0.585

Length

591 amino acids

Sequence
(BLAST)

001: MSTPPPAAAA SPATDQGKTK SKKKSKKHQE DTSSSLAVAA ASVDEAAEAK ADGYLIKPQS VAPPLDTSAW PLLLKNYDRL NVRTGHYTPL PAGHSPLKRP
101: IAEYLRYGVI NLDKPSNPSS HEVVAWIKRL LRVEKTGHSG TLDPKVTGNL IVCVDRATRL VKSQQGAGKE YVCVARFHAA VPDTARVARA LEALTGAVFQ
201: RPPLISAVKR QLRVRTIYES KLLEHDADRH LAVFWISCEA GTYVRTLCVH LGLLLGVGAH MQELRRVRSG ILGETDNMVT MHDVMDARWA MDNFNDESYL
301: RRIVMPLEVL LTSYKRLVVK DSAVNAICYG AKLMIPGLLR FENEIEVGEE VVLMTTKGEA IAIGIAEMTT AVMATCDHGA VAKIKRVVMD RDTYPRKWGL
401: GPVALKKKKM VAEGLLDKHG KPNEKTPSEW LRNAVLPAGG DAMIAGIAAA PEPEKPKVKE EADVAEETKE KKKKKHKDWA GDNADEGRKR KVGDDDLSAS
501: VSAKKIKVEE EADAVEGEKS EKKKKKKKDK AESAYADGEV KAELSDGEKG GSEKKKKKKK SKEGEAGDDE AEKSEKKKEK KKKNRDAEVT Q

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.