Factsheet for Bra003270.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67680	Canola	cytosol	99.45	99.45
Bra033149.1-P	Field mustard	cytosol	82.08	82.08
AT3G57150.1	Thale cress	cytosol	82.45	79.82
TraesCS2D01G156900.1	Wheat	cytosol	70.93	73.21
Os04t0576300-01	Rice	nucleus, plastid	26.33	72.36
PGSC0003DMT400018869	Potato	cytosol	74.77	71.38
TraesCS2D01G157000.1	Wheat	nucleus	71.66	70.5
Os11t0598700-00	Rice	mitochondrion	25.78	69.8
VIT_08s0007g00190.t01	Wine grape	cytosol	73.31	68.43
KRH43875	Soybean	nucleus	72.39	68.28
Solyc02g081810.2.1	Tomato	nucleus	74.22	68.01
KRH10580	Soybean	nucleus	73.13	67.91
Zm00001d008327_P001	Maize	plasma membrane	71.48	67.07
EER99769	Sorghum	cytosol, nucleus, plastid	71.66	66.89
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	70.75	66.84
EES02707	Sorghum	cytosol	71.3	66.78
GSMUA_Achr11P...	Banana	cytosol	61.79	66.67
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	70.57	66.21
Os03t0370500-02	Rice	nucleus	71.12	65.82
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	72.39	65.45
Os07t0636000-01	Rice	nucleus	71.66	65.33
TraesCS2B01G177000.1	Wheat	nucleus	72.39	65.24
TraesCS2A01G151800.1	Wheat	cytosol	72.21	64.97
GSMUA_Achr11P...	Banana	nucleus	70.2	60.28
HORVU2Hr1G027370.1	Barley	cytosol	64.53	54.98
HORVU2Hr1G027400.5	Barley	plastid	64.17	51.39
GSMUA_Achr8P15080_001	Banana	nucleus	61.97	38.88
Bra008756.1-P	Field mustard	plastid	6.03	6.32

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	EnsemblPlantsGene:Bra003270	EnsemblPlants:Bra003270.1	EnsemblPlants:Bra003270.1-P
ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	InterPro:IPR002478	UniProt:M4CGD7	PFAM:PF01472
PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf
InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697
TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI000254159D	InterPro:Uncharacterised_CHP00451	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

AT3G57150 (E=2e-218) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase

Coordinates

chrA07:-:12300956..12302599

Molecular Weight (calculated)

60964.7 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.608

Length

547 amino acids

Sequence
(BLAST)

001: MTEVEEVPAD TGDYMIKPQS FTPAIDTSQW PLLLKNYDLL NVRTGHYTPI SSGHSPLKRP LIDYIRYGVI NLDKPSNPSS HEVVAWIKRI LRVEKTGHSG
101: TLDPKVTGNL IVCIDRATRL VKSQQGAGKE YVCVARLHSA VPDVAKVARA LESLTGAVFQ RPPLISAVKR QLRIRTIYQS KLLEYDADRH LVVFWVSCEA
201: GTYIRTMCVH LGLLLGVGGH MQELRRVRSG ILGENDNMVT MHDVMDAQWM YDNYKDESYL RRVIMPLEVI LTSYKRLVVK DSAVNAICYG AKLMIPGLLR
301: FENDIDVGTE VVLMTTKGEA IAVGIAEMTT SVMATCDHGV VAKIKRVVMD RDTYPRKWGL GPRASMKKKL IADGKLDKHG KPNEKTPVEW SRNVVLPTGG
401: DAMIAGAAAA PEKVVAVVEK VEAENGEVSK RKHKRDESSD SPAPVSTKKA KTKDVEGGEG EEKVKSEKKE KKKKKDKEEE KEEVATPKSE KKKKKSKETD
501: EAASAEKSEK KKKKKSKEVD EAASAEKSEK KKKKDKKKKS KDSEDEE

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.