Factsheet for Os04t0576300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 18203134

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0502800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Os05t0502800-01	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0598700-00	Rice	mitochondrion	78.39	77.23
TraesCS2D01G156900.1	Wheat	cytosol	79.9	30.0
TraesCS2D01G157000.1	Wheat	nucleus	79.9	28.6
CDY33839	Canola	cytosol	72.86	27.83
CDY25279	Canola	cytosol	72.86	27.57
CDY50671	Canola	cytosol	72.36	27.38
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	78.89	26.93
EER99769	Sorghum	cytosol, nucleus, plastid	78.89	26.79
Os03t0370500-02	Rice	nucleus	79.4	26.73
Os07t0636000-01	Rice	nucleus	80.4	26.67
Bra033149.1-P	Field mustard	cytosol	72.86	26.51
Bra003270.1-P	Field mustard	cytosol	72.36	26.33
CDX67680	Canola	cytosol	72.36	26.33
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	79.9	26.28
TraesCS2B01G177000.1	Wheat	nucleus	79.9	26.19
TraesCS2A01G151800.1	Wheat	cytosol	79.9	26.15
PGSC0003DMT400018869	Potato	cytosol	74.37	25.83
GSMUA_Achr11P...	Banana	cytosol	65.33	25.64
AT3G57150.1	Thale cress	cytosol	72.36	25.49
VIT_08s0007g00190.t01	Wine grape	cytosol	73.87	25.09
Solyc02g081810.2.1	Tomato	nucleus	74.87	24.96
KRH43875	Soybean	nucleus	72.36	24.83
HORVU2Hr1G027370.1	Barley	cytosol	79.9	24.77
KRH10580	Soybean	nucleus	72.86	24.62
HORVU2Hr1G027400.5	Barley	plastid	79.4	23.13
GSMUA_Achr11P...	Banana	nucleus	71.36	22.29
GSMUA_Achr8P15080_001	Banana	nucleus	69.85	15.94

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:3.30.2350.10	UniProt:A0A0P0WDZ0	ProteinID:BAS90605.1	GO:GO:0000495	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:0031118
GO:GO:0031120	GO:GO:0031429	GO:GO:1990481	EnsemblPlantsGene:Os04g0576300	EnsemblPlants:Os04t0576300-01	PFAM:PF01509
PFAM:PF16198	PANTHER:PTHR23127	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00425
InterPro:TruB_C	UniParc:UPI0003938EAD	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:	:

Description

OsSTA131tRNA pseudouridine synthase B, N-terminal domain containing protein. (Os04t0576300-01)

Coordinates

chr4:-:29032490..29033262

Molecular Weight (calculated)

22252.3 Da

IEP (calculated)

10.841

GRAVY (calculated)

-0.101

Length

199 amino acids

Sequence
(BLAST)

001: ASKSVAAPFP SHASLRNLHP LIAAYPSRPP RVRLDRRWVV AWIKRLLRVN KTGHSGTLDP KVTGNLIVCV DRATRLVKSQ QGAGKEYVCV ARFHAADTAR
101: ALEALTGAMF QRLPLISAVK RQLRVRTIYE SKLLEHDAER HLAVFWISCE AGTYVRTLCV HLGLLLGVGA HMQELHRVRS GIHGEQDNMV TMHDVMDAR

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.