Factsheet for GSMUA_Achr8P15080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P00860_001
GSMUA_Achr9P12240_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	GSMUA_Achr5P00860_001	AT1G03530.1	17712600
AT3G57150.1	GSMUA_Achr9P12240_001	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	43.92	75.54
Os04t0576300-01	Rice	nucleus, plastid	15.94	69.85
Os11t0598700-00	Rice	mitochondrion	15.48	66.83
TraesCS2D01G156900.1	Wheat	cytosol	39.11	64.34
GSMUA_Achr11P...	Banana	nucleus	46.22	63.27
EER99769	Sorghum	cytosol, nucleus, plastid	41.86	62.29
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	41.28	62.18
TraesCS2D01G157000.1	Wheat	nucleus	39.56	62.05
Bra003270.1-P	Field mustard	cytosol	38.88	61.97
EES02707	Sorghum	cytosol	41.4	61.82
CDX67680	Canola	cytosol	38.76	61.79
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	41.28	61.75
VIT_08s0007g00190.t01	Wine grape	cytosol	41.05	61.09
Zm00001d008327_P001	Maize	plasma membrane	40.83	61.06
CDY33839	Canola	cytosol	36.47	61.04
CDY50671	Canola	cytosol	36.81	61.03
CDY25279	Canola	cytosol	36.81	61.03
PGSC0003DMT400018869	Potato	cytosol	39.91	60.73
AT3G57150.1	Thale cress	cytosol	39.11	60.35
Os07t0636000-01	Rice	nucleus	41.51	60.33
Solyc02g081810.2.1	Tomato	nucleus	41.05	59.97
Os03t0370500-02	Rice	nucleus	40.48	59.73
Bra033149.1-P	Field mustard	cytosol	37.04	59.05
KRH43875	Soybean	nucleus	38.99	58.62
TraesCS2B01G177000.1	Wheat	nucleus	40.6	58.32
TraesCS2A01G151800.1	Wheat	cytosol	40.48	58.06
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	40.25	58.02
KRH10580	Soybean	nucleus	39.11	57.89
HORVU2Hr1G027370.1	Barley	cytosol	37.84	51.4
HORVU2Hr1G027400.5	Barley	plastid	37.73	48.17
GSMUA_Achr6P06680_001	Banana	mitochondrion	4.01	8.27

Protein Annotations

MapMan:15.5.22	MapMan:17.1.1.2.2.1.1	Gene3D:2.20.25.80	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:0043565	EnsemblPlantsGene:GSMUA_Achr8G15080_001
EnsemblPlants:GSMUA_Achr8P15080_001	EnsemblPlants:GSMUA_Achr8T15080_001	InterPro:IPR002478	InterPro:IPR003657	InterPro:IPR036576	UniProt:M0TQL1
PFAM:PF01472	PFAM:PF01509	PFAM:PF03106	PFAM:PF16198	PFscan:PS50811	PFscan:PS50890
PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359
SMART:SM00774	SUPFAM:SSF118290	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451
InterPro:TruB_C	UniParc:UPI0002968972	InterPro:Uncharacterised_CHP00451	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G15080_001]

Coordinates

chr8:-:12577236..12589625

Molecular Weight (calculated)

95606.8 Da

IEP (calculated)

8.995

GRAVY (calculated)

-0.396

Length

872 amino acids

Sequence
(BLAST)

001: MSSPSPTAND NKKKKKNKDD QKSAANGGIE RTSLPLLPAA CFGGDQDKDY FIKPQSFTPA VDTSTWPILL KNYDRLNVVA WIKRILRAEK TGHSGTLDPK
101: VTGNLIVCVD RATRLVKSQQ GAGKEYVCVA RLHSAVPDVA KVARALETLT GAVFQRPPLI SAVKRELRIR TIYESKLLEY DPDRHLVVFW ISCQAGTYVR
201: TLCVHLGLIL GVGGHMQELR RVRSGILGEK DNMVTMHDVL DAQWMYDNFK DESYLRRVVM PLEVLLTSYK RLVVKDSAVN AICYGAKLMI PGLLRFENDI
301: EVGEEVVLMT TKGEAIALGI ADMTTAVMAT CDHGSVAKIK RVVMDRDTYP RKWGLGPRAL MKKKMIAEGL LDKHGKPNEK TPAEWLRNVV LPTGGDSMVA
401: SLAAAPESVV QKEEVVFEVV KEKKKNKHKD GTYNDDDGER RKRKLEDAGE VPPVKKVKIE GLQDAILGAE AKKVKDEIGL NLVPSNAQAG QSVIAENEKP
501: ENKVQILTLQ RELSQVNEEN RRLRSMLDQL TKSYTALHTQ LLQVMQQREV HEIRRGQVFC SRGELLAHQF MEPAPTRLLN TGQRQDDDDG EHSSSRNKNS
601: SDRGVVPFPQ THLPHVDASS EHTSPSLEEG KSPRLVHERS TDTASEAPCR RARVSVRARS DAPMINDGCQ WRKYGQKMAK GNPCPRAYYR CTMAIACPVR
701: KQVQRCAEDK TILVTTYEGN HNHPLPPAAT VMANTTSSAA AMLLSGSTTS EDSLMAPAAG SFLHPSTYAS TMAALSASAP FPTITLDLTQ TANQLQLLQR
801: PQHPQQSMVE TVTAAITTDP NFTAALAAAI TSVMGAPGTT NGASGSNAAS IGPAIVPESP QCPKSCTTFS IN

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.