Factsheet for Zm00001d022265_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038622_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Zm00001d038622_P001	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99769	Sorghum	cytosol, nucleus, plastid	90.74	90.27
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	87.65	88.26
Zm00001d008327_P001	Maize	plasma membrane	87.82	87.82
TraesCS2D01G156900.1	Wheat	cytosol	76.5	84.15
Os07t0636000-01	Rice	nucleus	84.73	82.33
TraesCS2D01G157000.1	Wheat	nucleus	77.19	80.94
TraesCS2B01G177000.1	Wheat	nucleus	82.68	79.41
Os04t0576300-01	Rice	nucleus, plastid	26.93	78.89
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	81.82	78.84
TraesCS2A01G151800.1	Wheat	cytosol	82.16	78.78
Os03t0370500-02	Rice	nucleus	78.73	77.67
Os11t0598700-00	Rice	mitochondrion	26.59	76.73
CDY33839	Canola	cytosol	63.12	70.63
Bra003270.1-P	Field mustard	cytosol	66.21	70.57
CDX67680	Canola	cytosol	66.21	70.57
CDY25279	Canola	cytosol	63.46	70.34
GSMUA_Achr11P...	Banana	cytosol	60.72	69.82
CDY50671	Canola	cytosol	62.95	69.77
AT3G57150.1	Thale cress	cytosol	67.58	69.73
PGSC0003DMT400018869	Potato	cytosol	67.41	68.59
VIT_08s0007g00190.t01	Wine grape	cytosol	68.44	68.09
Bra033149.1-P	Field mustard	cytosol	62.95	67.09
Solyc02g081810.2.1	Tomato	nucleus	67.92	66.33
HORVU2Hr1G027370.1	Barley	cytosol	72.56	65.89
KRH10580	Soybean	nucleus	66.38	65.7
KRH43875	Soybean	nucleus	65.35	65.69
GSMUA_Achr11P...	Banana	nucleus	69.98	64.05
HORVU2Hr1G027400.5	Barley	plastid	72.38	61.79
GSMUA_Achr8P15080_001	Banana	nucleus	61.75	41.28
Zm00001d035698_P001	Maize	mitochondrion	7.55	8.84

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	UniProt:A0A1D6IKP8	ncoils:Coil	InterPro:Dyskerin-like
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:0019013	GO:GO:0030529
InterPro:IPR002478	ProteinID:ONM59977.1	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198
PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359
SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C
UniParc:UPI0008428498	InterPro:Uncharacterised_CHP00451	EnsemblPlantsGene:Zm00001d022265	EnsemblPlants:Zm00001d022265_P001	EnsemblPlants:Zm00001d022265_T001	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

H/ACA ribonucleoprotein complex subunit 4

Coordinates

chr7:-:173955793..173957584

Molecular Weight (calculated)

63898.8 Da

IEP (calculated)

9.580

GRAVY (calculated)

-0.575

Length

583 amino acids

Sequence
(BLAST)

001: MSSTPPAVAS PASEQTKSKK KKHKSKDLPA TDPPSLAEAE EKTDGYLIKP QSLVPSLDTS TWPLLLKNYD RLNVRTGHYT PLPSGHSPLK RPLAEHLRYG
101: VINLDKPSNP SSHEVVAWIK RILRAEKTGH SGTLDPKVTG NLIVCVDRAT RLVKSQQGAG KEYVCVARFH AAVPDTARVA RALEALTGAV FQRPPLISAV
201: KRQLRVRTIY ESKLLEHDPE RHLAVFWISC EAGTYVRTLC VHLGLLLGVG AHMQELRRVR SGILGEQDNM VTMHDVMDAM WSLDNHKDES YLRRVVMPLE
301: VLLTSYKRLV VKDSAVNAIC YGAKLMIPGL LRFENDIETG EEVVLMTTKG EAIAIGIAEM TTAVMATCDH GAVAKIKRVV MDRDTYPRKW GLGPVALKKK
401: KMVAEGLLDK HGKPNEKTPA EWLRNVVLPT GGDVSIASIA AAPEPEKVKV EQDAVAGEKV KEKKKKRQQD ENNGDDASVP AKKIKVEEDA EVVEGEGDKS
501: EKKKKKKEKV ESESADAAEA KEVEKADDAA DETGSEKKKK KKSKEGSAAA ADAESAEHAD GAGVEKSKKK REKKKKSGET EQA

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.