Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22065420
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d008327_P001 | |
| Zm00001d022265_P001 | |
| Zm00001d040293_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | Zm00001d008327_P001 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | Zm00001d022265_P001 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | Zm00001d040293_P001 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19773 | Sorghum | nucleus | 73.77 | 75.79 |
| Os05t0502800-01 | Rice | nucleus | 49.0 | 54.04 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 40.61 | 50.75 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 39.15 | 49.92 |
| HORVU6Hr1G056850.1 | Barley | plastid | 41.28 | 44.48 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 40.88 | 44.17 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 49.27 | 41.16 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 50.07 | 40.69 |
| TraesCS1A01G322700.1 | Wheat | plastid | 46.87 | 40.23 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 48.34 | 39.16 |
| KRH56025 | Soybean | mitochondrion, nucleus | 16.25 | 33.42 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 27.83 | 32.71 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 22.24 | 31.16 |
| KRH25503 | Soybean | nucleus | 22.77 | 30.0 |
| CDY15463 | Canola | nucleus | 19.71 | 26.19 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 23.7 | 25.07 |
| CDY64129 | Canola | nucleus | 23.04 | 24.43 |
| PGSC0003DMT400047290 | Potato | nucleus | 23.83 | 24.09 |
| CDY51392 | Canola | nucleus | 21.44 | 23.1 |
| AT1G03530.1 | Thale cress | nucleus | 24.63 | 23.1 |
| Solyc07g054460.2.1 | Tomato | nucleus | 23.44 | 22.62 |
Protein Annotations
| EnsemblPlants:Zm00001d038622_P001 | EnsemblPlants:Zm00001d038622_T001 | EnsemblPlantsGene:Zm00001d038622 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 |
| InterPro:IPR038664 | InterPro:Transl_B-barrel_sf | PFAM:PF04410 | ProteinID:AQK87040.1 | SEG:seg | SUPFAM:SSF50447 |
| UniParc:UPI000221A8E1 | UniProt:A0A1D6M7L3 | MapMan:17.1.1.2.2.1.4 | : | : | : |
Description
nuclear assembly factor 1
Coordinates
chr6:-:161065061..161069213
Molecular Weight (calculated)
80831.7 Da
IEP (calculated)
4.263
GRAVY (calculated)
-0.771
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRQPKPPAS PSPPPCPPSD SDPDPGSGFD PIEEWLVDFD PAMSSELEAK GPELAEQAAA VPLTLETAAQ KSFELEFGVK DQKVEVVSSE LDGLLAPDQL
101: LVSGIGDLAV REDIPEEAVA MKMAATPPAA ADTDMNTTVS VEVESEGGKE GQEAPAAPAD AEMMNTMVSV EVEAQGGKEG QESSDEESES ESSEDDDELS
201: SSEDSSSSED EKEQGVNKDE ESSEASSSEE EGLEVRRHGG KADNLQSLLE EGELMMGSDV ENEEQKGGTK SKYEAEVLPP VPKIEIQLEP HHQTLPVGTI
301: SAIMGERVIV EGSVQHNPLN EGSILWITES RMPLGIVDEL FGPVKNPYYL VRYNSEEEVP AGISAGTDVC FVAEFADHIL NMKELYAKGY DESDSVDKDA
401: EDLPDFSDDE KEAEYKRSLR QAKRQTDRQH EPMKTSCYMK GSQPRGSGIR KPMPPRNLDT STRGHQPQPH FRRSDMAPAG TENTARSLGP QNAPMIAPTM
501: LQPGPMNPAV PPPVPLANQM GGCFMNLAQQ QLLPQQPNMV WPGGFPQPPL PNMGVDGAAL AANIMQNLLA GASQFQHQFQ NLNFSGAGAN QFPQQFQNQN
601: FSGGTGANQF PQQFQNQNLS GPGTNQFQQQ FPNQNFSGFP NQMPMPFLQT MHQTGMPANP MPFGGRPPAN PPSGPASIAP MGQGNFGQPP NPQGFTIPAP
701: PGEDGKQGSP PQFSSRQFHQ GSSSSFGRGR TQHRGGRHSY GRGGRGGRHP R
101: LVSGIGDLAV REDIPEEAVA MKMAATPPAA ADTDMNTTVS VEVESEGGKE GQEAPAAPAD AEMMNTMVSV EVEAQGGKEG QESSDEESES ESSEDDDELS
201: SSEDSSSSED EKEQGVNKDE ESSEASSSEE EGLEVRRHGG KADNLQSLLE EGELMMGSDV ENEEQKGGTK SKYEAEVLPP VPKIEIQLEP HHQTLPVGTI
301: SAIMGERVIV EGSVQHNPLN EGSILWITES RMPLGIVDEL FGPVKNPYYL VRYNSEEEVP AGISAGTDVC FVAEFADHIL NMKELYAKGY DESDSVDKDA
401: EDLPDFSDDE KEAEYKRSLR QAKRQTDRQH EPMKTSCYMK GSQPRGSGIR KPMPPRNLDT STRGHQPQPH FRRSDMAPAG TENTARSLGP QNAPMIAPTM
501: LQPGPMNPAV PPPVPLANQM GGCFMNLAQQ QLLPQQPNMV WPGGFPQPPL PNMGVDGAAL AANIMQNLLA GASQFQHQFQ NLNFSGAGAN QFPQQFQNQN
601: FSGGTGANQF PQQFQNQNLS GPGTNQFQQQ FPNQNFSGFP NQMPMPFLQT MHQTGMPANP MPFGGRPPAN PPSGPASIAP MGQGNFGQPP NPQGFTIPAP
701: PGEDGKQGSP PQFSSRQFHQ GSSSSFGRGR TQHRGGRHSY GRGGRGGRHP R
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.