Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 78.63 | 76.53 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 79.31 | 74.87 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 74.86 | 70.89 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 38.4 | 55.91 |
| Os05t0502800-01 | Rice | nucleus | 42.86 | 55.07 |
| EES19773 | Sorghum | nucleus | 41.6 | 49.79 |
| Zm00001d038622_P001 | Maize | plastid | 40.23 | 46.87 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 25.83 | 35.37 |
| KRH56025 | Soybean | mitochondrion, nucleus | 14.74 | 35.34 |
| KRH25503 | Soybean | nucleus | 21.26 | 32.63 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 19.89 | 32.46 |
| CDY15463 | Canola | nucleus | 18.06 | 27.96 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 22.06 | 27.18 |
| PGSC0003DMT400047290 | Potato | nucleus | 22.4 | 26.38 |
| Solyc07g054460.2.1 | Tomato | nucleus | 23.2 | 26.09 |
| CDY64129 | Canola | nucleus | 20.8 | 25.71 |
| AT1G03530.1 | Thale cress | nucleus | 22.74 | 24.84 |
| CDY51392 | Canola | nucleus | 19.77 | 24.82 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G322700.1 | EnsemblPlantsGene:TraesCS1A01G322700 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 | : |
Description
No Description!
Coordinates
chr1A:-:513623272..513628004
Molecular Weight (calculated)
93080.2 Da
IEP (calculated)
4.568
GRAVY (calculated)
-0.614
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVASLDFGS SMWWLQSQHH SRLVPAFGNR SWNTRFPPSQ HPVNIILASP ITVVVAHVCR GGLGADQIVE EGQGEAAEDK GGPPGLLDAP PGVLLEVKKE
101: AVVLLGGGLG GVPAPVLRIG DFVAQEDSLG AAIDAEMCTV AAGDADASSV AAVHAAASTV PPVDAEMSTV ASVAADTSAM AAVDAETSPA GASVDAEMSA
201: IGAVDADTST IASVDAEMSS GAMVNKEVER GGGKGEEESK DEESESSEDE ELSEALSSSD EEEEPAKNDE ESSEASSSSD EEVPVAKKHS CPSDMEALLE
301: EGELMTGVED EDDDETPKGP IKSKHEVEVL PPVPKIEVQL EPHHKALPVG TITAIMGERV IVEGSVEHSP LTEGSILWIT ESRTPLGIVD EIFGPVKNPY
401: YLVRYNSVEE VPAGISAGTT VCFVVEFADH ILNMKELYAK GYDESADHDE EADEPEFSDD EQEAEYKRSL RLVKRQTDRP HDSKKPSGDK KRAQTRGAGF
501: RNDMPPRIHN TPTSGHQSQR RFHRSDMADS VTYHSGQQNS PMSTPRDMPP RIHDASTADR RAQPLFHRSD MATAVADSAT RQTGPQNFPM STPTMLPSIS
601: MNHAMPSPVQ LANQMGSCFI NPQQFSQQPN MVWPGGLPPP GQPNMGVDGA ALAANIMQNI LMGANQFQQY LQNQNFGGFP NGMPMAQQQF MPGSTMSANM
701: MPFGGPPVNH PFGQASQFSM GQGNFGQFPH MAGNQGPPAG FPNTQGFGRF PSQHEDGDQP PGNANMQGHG RLPSTHGDGG QPPMQFNSLP SPRGDGGQQP
801: PMQFNSLPSP RGDGGQPPMQ FNSLPSPRGD GGQPPMQFNS GQFNQGNSSF RGRRPQQRGG RHSPGRGGGG GRHRK
101: AVVLLGGGLG GVPAPVLRIG DFVAQEDSLG AAIDAEMCTV AAGDADASSV AAVHAAASTV PPVDAEMSTV ASVAADTSAM AAVDAETSPA GASVDAEMSA
201: IGAVDADTST IASVDAEMSS GAMVNKEVER GGGKGEEESK DEESESSEDE ELSEALSSSD EEEEPAKNDE ESSEASSSSD EEVPVAKKHS CPSDMEALLE
301: EGELMTGVED EDDDETPKGP IKSKHEVEVL PPVPKIEVQL EPHHKALPVG TITAIMGERV IVEGSVEHSP LTEGSILWIT ESRTPLGIVD EIFGPVKNPY
401: YLVRYNSVEE VPAGISAGTT VCFVVEFADH ILNMKELYAK GYDESADHDE EADEPEFSDD EQEAEYKRSL RLVKRQTDRP HDSKKPSGDK KRAQTRGAGF
501: RNDMPPRIHN TPTSGHQSQR RFHRSDMADS VTYHSGQQNS PMSTPRDMPP RIHDASTADR RAQPLFHRSD MATAVADSAT RQTGPQNFPM STPTMLPSIS
601: MNHAMPSPVQ LANQMGSCFI NPQQFSQQPN MVWPGGLPPP GQPNMGVDGA ALAANIMQNI LMGANQFQQY LQNQNFGGFP NGMPMAQQQF MPGSTMSANM
701: MPFGGPPVNH PFGQASQFSM GQGNFGQFPH MAGNQGPPAG FPNTQGFGRF PSQHEDGDQP PGNANMQGHG RLPSTHGDGG QPPMQFNSLP SPRGDGGQQP
801: PMQFNSLPSP RGDGGQPPMQ FNSLPSPRGD GGQPPMQFNS GQFNQGNSSF RGRRPQQRGG RHSPGRGGGG GRHRK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.