Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g081810.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | Solyc02g081810.2.1 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047290 | Potato | nucleus | 62.08 | 65.01 |
| KRH56025 | Soybean | mitochondrion, nucleus | 18.38 | 39.18 |
| KRH25503 | Soybean | nucleus | 26.22 | 35.79 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 30.85 | 33.8 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 21.21 | 30.78 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 23.78 | 30.78 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 23.01 | 30.39 |
| Os05t0502800-01 | Rice | nucleus | 25.32 | 28.93 |
| CDY15463 | Canola | nucleus | 20.69 | 28.5 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 22.75 | 27.7 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 24.42 | 27.34 |
| CDY51392 | Canola | nucleus | 24.16 | 26.97 |
| HORVU6Hr1G056850.1 | Barley | plastid | 23.52 | 26.26 |
| CDY64129 | Canola | nucleus | 23.14 | 25.42 |
| EES19773 | Sorghum | nucleus | 23.01 | 24.49 |
| AT1G03530.1 | Thale cress | nucleus | 25.19 | 24.47 |
| Zm00001d038622_P001 | Maize | plastid | 22.62 | 23.44 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 27.76 | 23.38 |
| TraesCS1A01G322700.1 | Wheat | plastid | 26.09 | 23.2 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 26.74 | 23.14 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 26.86 | 22.55 |
Protein Annotations
| EnsemblPlants:Solyc07g054460.2.1 | EnsemblPlantsGene:Solyc07g054460.2 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | UniParc:UPI000276C415 | UniProt:K4CFZ1 |
| MapMan:17.1.1.2.2.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7:-:62774569..62779426
Molecular Weight (calculated)
83779.1 Da
IEP (calculated)
4.379
GRAVY (calculated)
-0.721
Length
778 amino acids
Sequence
(BLAST)
(BLAST)
001: MADKKQQPLE LGSVNDGVSE KCQTQTEDPL SCLNQEESQI GVSEKCDIQM EDPLSCLNQE ECQIGVSEKG DIQTEDPLSC LNHEQSSENG MKVEEFDSIV
101: EEKMGRVSIS GIEDERVVDQ ADVGNVSGSV VAAAAAMISK NEESDNKVVI SSKVVERIVN DNGNGSIVSN SDTESESESE REASSSASSS DSDEDESSSN
201: DEAEEEANME EGEIVASDVD EMVGWDDDDE DTGVKGPIRS KNEVQVLPPV PEVTATLQPH HQMQPVGVVS STIGAQVVVE GVEKHTPLCD GSILWITESR
301: FPLGIVDEIF GPVKNPYYIV RYNSENEVPP GIHPGTLISF VPEFSSYILN DNSLYKKGYD ASGENDEEAS EDEFSDDEKE AEHRRMLKMK KRDVMNDQKP
401: GNRKDKRNLK NRPQNWKHDQ GVAADVQHKN GKLSVDQSPR FIPAAAAAAA PMDQGIHQSA PRQGHGQSIR PPSVPPFPHM QNSPGLASPS TGVWPNGFPF
501: QQPQNMGFPN TLPNMGMSWP QQGHPQQMFQ MPLPNALPFE QQINPALPPN FMFPGGLPNF GAGPPFGPWP AFGQNVFNQP GMPMGLPGQF TPAPMNLGGQ
601: VPANGPQLGQ NNNSQPNAVV PGYINGSPNF NQGQSPSPMS IPGQFTPPPM NLGGQVPANG PQLGQNNNSQ PNAVVPGYIN GSPNFNQGQS PSPMSIPGQF
701: TPPPMNLGGQ VPENGPKSGQ NNNNVSPNFT RGAHSGGGRR GNHRGGGRFG GRRVLSLLEN AQRYTKALAL HICSQFLP
101: EEKMGRVSIS GIEDERVVDQ ADVGNVSGSV VAAAAAMISK NEESDNKVVI SSKVVERIVN DNGNGSIVSN SDTESESESE REASSSASSS DSDEDESSSN
201: DEAEEEANME EGEIVASDVD EMVGWDDDDE DTGVKGPIRS KNEVQVLPPV PEVTATLQPH HQMQPVGVVS STIGAQVVVE GVEKHTPLCD GSILWITESR
301: FPLGIVDEIF GPVKNPYYIV RYNSENEVPP GIHPGTLISF VPEFSSYILN DNSLYKKGYD ASGENDEEAS EDEFSDDEKE AEHRRMLKMK KRDVMNDQKP
401: GNRKDKRNLK NRPQNWKHDQ GVAADVQHKN GKLSVDQSPR FIPAAAAAAA PMDQGIHQSA PRQGHGQSIR PPSVPPFPHM QNSPGLASPS TGVWPNGFPF
501: QQPQNMGFPN TLPNMGMSWP QQGHPQQMFQ MPLPNALPFE QQINPALPPN FMFPGGLPNF GAGPPFGPWP AFGQNVFNQP GMPMGLPGQF TPAPMNLGGQ
601: VPANGPQLGQ NNNSQPNAVV PGYINGSPNF NQGQSPSPMS IPGQFTPPPM NLGGQVPANG PQLGQNNNSQ PNAVVPGYIN GSPNFNQGQS PSPMSIPGQF
701: TPPPMNLGGQ VPENGPKSGQ NNNNVSPNFT RGAHSGGGRR GNHRGGGRFG GRRVLSLLEN AQRYTKALAL HICSQFLP
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.