Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G027370.1 | |
| HORVU2Hr1G027400.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | HORVU2Hr1G027370.1 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | HORVU2Hr1G027400.5 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 76.9 | 77.12 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 63.85 | 75.55 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 64.71 | 75.04 |
| Os05t0502800-01 | Rice | nucleus | 50.5 | 51.69 |
| EES19773 | Sorghum | nucleus | 45.05 | 42.95 |
| Zm00001d038622_P001 | Maize | plastid | 44.48 | 41.28 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 49.5 | 37.34 |
| KRH56025 | Soybean | mitochondrion, nucleus | 17.5 | 33.42 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 30.42 | 33.18 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 24.82 | 32.28 |
| KRH25503 | Soybean | nucleus | 24.1 | 29.47 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 26.83 | 26.34 |
| CDY15463 | Canola | nucleus | 20.8 | 25.66 |
| CDY64129 | Canola | nucleus | 24.96 | 24.58 |
| PGSC0003DMT400047290 | Potato | nucleus | 25.82 | 24.23 |
| Solyc07g054460.2.1 | Tomato | nucleus | 26.26 | 23.52 |
| CDY51392 | Canola | nucleus | 22.96 | 22.96 |
| AT1G03530.1 | Thale cress | nucleus | 25.82 | 22.47 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G056850.1 | EnsemblPlantsGene:HORVU6Hr1G056850 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | UniParc:UPI000B46CC56 | UniProt:A0A287U9E1 |
| MapMan:17.1.1.2.2.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:366312255..366316126
Molecular Weight (calculated)
75004.8 Da
IEP (calculated)
4.665
GRAVY (calculated)
-0.762
Length
697 amino acids
Sequence
(BLAST)
(BLAST)
001: RGQSPAQNPS PKPPHRHPAV LNPPLRLCLE PHPEPLSHSV APSASPCALP SSRRRGALPC LPRLRFVGEG ARTFATHHRR HCSALPVPPS LSPHPARTLA
101: AIYTEMDTEV LVKEVPKGGG GKGEEGSKDE AAVRAEMIPE VLLKEEVTKG EDQSNGEASV DAEMNSEVSA EVETENGASK GKEESEAEEE DGESGEASSS
201: SEEEDEEEDE EEDESSEASS SSDEEEQRVN SGVGDMATLI EEGELMVGIS DDDDDEEEAS KGHIDSKHEA ETLPPVPKIE VQLEPHHKAL PVGTISSIMG
301: ERVIVEGSVQ HNPLNEGSIL WITESRTPLG IVEELFGPVK NPYYLVRYNS VEEVPSGISA GTAVSFVMEF ANHILNVKEL YTKGYDGSGD NIEDQTDDPE
401: FSDDEKEAEY KKSLRLAKGQ TDRQLDSKKR SGDKKRKRPR DAGFHKGIPR IHDVATPAHQ STHRIYRSDM APVADNSACS RTSLPIMTPP VPVNPSMASA
501: IQFADQKGAC FPNPSQQFLP QQPNVVWPGG FPPSMYTNMG INGAALAANI MQNILSGSNQ YQQHYQNQNF GGFLNGMPMT PTQLIPQSGM PVNPMPFGGP
601: QLNPSFGPIS ELGMGQGNFG NNGYLGGDQG LPHPGLPNTQ GYGRLPSSQF NSGQGGQGPM QFNSGQFNQG SSSFSGRMPQ QQGGQHSQGR GSGGHHK
101: AIYTEMDTEV LVKEVPKGGG GKGEEGSKDE AAVRAEMIPE VLLKEEVTKG EDQSNGEASV DAEMNSEVSA EVETENGASK GKEESEAEEE DGESGEASSS
201: SEEEDEEEDE EEDESSEASS SSDEEEQRVN SGVGDMATLI EEGELMVGIS DDDDDEEEAS KGHIDSKHEA ETLPPVPKIE VQLEPHHKAL PVGTISSIMG
301: ERVIVEGSVQ HNPLNEGSIL WITESRTPLG IVEELFGPVK NPYYLVRYNS VEEVPSGISA GTAVSFVMEF ANHILNVKEL YTKGYDGSGD NIEDQTDDPE
401: FSDDEKEAEY KKSLRLAKGQ TDRQLDSKKR SGDKKRKRPR DAGFHKGIPR IHDVATPAHQ STHRIYRSDM APVADNSACS RTSLPIMTPP VPVNPSMASA
501: IQFADQKGAC FPNPSQQFLP QQPNVVWPGG FPPSMYTNMG INGAALAANI MQNILSGSNQ YQQHYQNQNF GGFLNGMPMT PTQLIPQSGM PVNPMPFGGP
601: QLNPSFGPIS ELGMGQGNFG NNGYLGGDQG LPHPGLPNTQ GYGRLPSSQF NSGQGGQGPM QFNSGQFNQG SSSFSGRMPQ QQGGQHSQGR GSGGHHK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.