Factsheet for HORVU2Hr1G027400.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G065830.1
HORVU6Hr1G056850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	HORVU1Hr1G065830.1	AT1G03530.1	17712600
AT3G57150.1	HORVU6Hr1G056850.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G027370.1	Barley	cytosol	81.55	86.76
Os04t0576300-01	Rice	nucleus, plastid	23.13	79.4
TraesCS2D01G156900.1	Wheat	cytosol	60.18	77.55
Os11t0598700-00	Rice	mitochondrion	22.84	77.23
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	65.74	74.21
TraesCS2B01G177000.1	Wheat	nucleus	65.89	74.14
TraesCS2A01G151800.1	Wheat	cytosol	65.89	74.01
TraesCS2D01G157000.1	Wheat	nucleus	60.18	73.92
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	61.79	72.38
EER99769	Sorghum	cytosol, nucleus, plastid	60.32	70.31
Os07t0636000-01	Rice	nucleus	61.49	70.0
Os03t0370500-02	Rice	nucleus	57.98	67.01
Bra003270.1-P	Field mustard	cytosol	51.39	64.17
CDY33839	Canola	cytosol	48.9	64.11
CDY25279	Canola	cytosol	49.19	63.88
CDX67680	Canola	cytosol	51.1	63.8
CDY50671	Canola	cytosol	49.05	63.69
GSMUA_Achr11P...	Banana	cytosol	46.27	62.33
AT3G57150.1	Thale cress	cytosol	51.39	62.12
Bra033149.1-P	Field mustard	cytosol	49.19	61.43
PGSC0003DMT400018869	Potato	cytosol	50.95	60.73
VIT_08s0007g00190.t01	Wine grape	cytosol	51.54	60.07
KRH43875	Soybean	nucleus	50.22	59.14
KRH10580	Soybean	nucleus	50.95	59.08
Solyc02g081810.2.1	Tomato	nucleus	51.1	58.46
GSMUA_Achr11P...	Banana	nucleus	53.88	57.77
GSMUA_Achr8P15080_001	Banana	nucleus	48.17	37.73
HORVU1Hr1G003530.7	Barley	plastid	6.15	7.59

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
EnsemblPlantsGene:HORVU2Hr1G027400	EnsemblPlants:HORVU2Hr1G027400.5	InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068
PFAM:PF16198	PFscan:PS50890	PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425
TIGRFAMs:TIGR00451	InterPro:TruB_C	InterPro:Uncharacterised_CHP00451	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:

Description

No Description!

Coordinates

chrchr2H:+:90217489..90236243

Molecular Weight (calculated)

52275.7 Da

IEP (calculated)

9.714

GRAVY (calculated)

-0.150

Length

683 amino acids

Sequence
(BLAST)

001: VPAKTLIPPP PPAAMSSTPP AVASPASEHT KSKKKKSKSK DASSDPAADT TSLADAEAKT DGYMIKPQAL VPSLDTSTWP LLLKNYDRLN VRTGHYTPLP
101: SGHSPLKRPL AEYLRYGVIN LDKPSNPSSH EVVAWIKRLL RVEKTGHSGT LDPKVTGNLI VCVDRATRLV KSQQGAGKEY VCIARFHAAV PDTARVARAL
201: ESLTGAVFQR PPLXSAVKRQ LRVRTIYESK LLEHDAERHL AVFWISCEAG TYVRTLCVHL GLLLGVGAHM QELRRVRSGI LGEQDNMVTM HDVMDAMWAL
301: DNHKDESYIR RVVMPLEVIL TSYKRLVVKD SAVNAICYGA KLMIPGLLRF ENDIDVGEEV VLMTTKGEAI AIGIAEMPTA VMATCDHGAV AKIKRVVMDR
401: DTYPRKWGLG PVALKKKKMI AEGLLDKHGK PTDKTPAEWL RNVVLPTGGD AMIASLAAAP EPEKVKAEQQ NVVPSEEVKX XXXXXXXXXX XXXXXXXXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.