Factsheet for HORVU2Hr1G027370.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G065830.1
HORVU6Hr1G056850.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	HORVU1Hr1G065830.1	AT1G03530.1	17712600
AT3G57150.1	HORVU6Hr1G056850.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G027400.5	Barley	plastid	86.76	81.55
Os04t0576300-01	Rice	nucleus, plastid	24.77	79.9
TraesCS2D01G156900.1	Wheat	cytosol	65.11	78.87
Os11t0598700-00	Rice	mitochondrion	24.45	77.72
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	70.72	75.04
TraesCS2D01G157000.1	Wheat	nucleus	64.95	75.0
TraesCS2A01G151800.1	Wheat	cytosol	71.03	75.0
TraesCS2B01G177000.1	Wheat	nucleus	70.72	74.79
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	65.89	72.56
EER99769	Sorghum	cytosol, nucleus, plastid	64.49	70.65
Os07t0636000-01	Rice	nucleus	65.42	70.0
Os03t0370500-02	Rice	nucleus	61.84	67.17
Bra003270.1-P	Field mustard	cytosol	54.98	64.53
CDY33839	Canola	cytosol	52.34	64.49
CDX67680	Canola	cytosol	54.67	64.17
CDY25279	Canola	cytosol	52.49	64.07
CDY50671	Canola	cytosol	52.34	63.88
AT3G57150.1	Thale cress	cytosol	55.14	62.65
GSMUA_Achr11P...	Banana	cytosol	48.91	61.93
Bra033149.1-P	Field mustard	cytosol	52.49	61.61
PGSC0003DMT400018869	Potato	cytosol	54.67	61.26
VIT_08s0007g00190.t01	Wine grape	cytosol	54.98	60.24
KRH10580	Soybean	nucleus	54.83	59.76
KRH43875	Soybean	nucleus	53.89	59.66
Solyc02g081810.2.1	Tomato	nucleus	54.83	58.96
GSMUA_Achr11P...	Banana	nucleus	56.85	57.3
GSMUA_Achr8P15080_001	Banana	nucleus	51.4	37.84
HORVU1Hr1G003530.7	Barley	plastid	6.54	7.59

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	UniProt:A0A287HHB1	ncoils:Coil	InterPro:Dyskerin-like
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982
GO:GO:0009987	EnsemblPlantsGene:HORVU2Hr1G027370	EnsemblPlants:HORVU2Hr1G027370.1	InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509
PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	PANTHER:PTHR23127	InterPro:PUA	InterPro:PUA-like_sf
InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697
TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI000B463EB6	InterPro:Uncharacterised_CHP00451	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:89856504..89858621

Molecular Weight (calculated)

55278.6 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.099

Length

642 amino acids

Sequence
(BLAST)

001: MSSTPPVVAS PASEHTKSKK KKSKSKDASS DPAADTTSLA DAEAKTDGYM IKPQALVPSL DTSTWPLLLK NYDRLNVRTG HYTPLPSGHS PLKRPLAEYL
101: RYGVINLDKP SNPSSHEVVA WIKRLLRVEK TGHSGTLDPK VTGNLIVCVD RATRLVKSQQ GAGKEYVCIA RFHAAVPDTA RVARALESLT GAVFQRPPLI
201: SAVKRQLRVR TIYESKLLEH DAERHLAVFW ISCEAGTYVR TLCVHLGLLL GVGAHMQELR RVRSGILGEQ DNMVTMHDVM DAMWALDNHK DESYIRRVVM
301: PLEVILTSYK RLVVKDSAVN AICYGAKLMI PGLLRFENDI DVGEEVVLMT TKGEAIAIGI AEMPTAVMAT CDHGAVAKIK RVVMDRDTYP RKWGLGPVAL
401: KKKKMIAEGL LDKHGKPTDK TPAEWLRNVV LPTGGDAMIA SLAAAPEPEK VKVEQQDVVP SEEVKEKKXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
601: XXXXXXXXXV VHIVWSCYLV AVMWEFELPV LFALNPLQPA MV

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.