Factsheet for Solyc02g081810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g054460.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	Solyc07g054460.2.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018869	Potato	cytosol	88.94	92.67
Os04t0576300-01	Rice	nucleus, plastid	24.96	74.87
Bra003270.1-P	Field mustard	cytosol	68.01	74.22
CDX67680	Canola	cytosol	68.01	74.22
CDY33839	Canola	cytosol	64.49	73.9
CDY50671	Canola	cytosol	64.82	73.57
AT3G57150.1	Thale cress	cytosol	69.51	73.45
CDY25279	Canola	cytosol	64.66	73.38
TraesCS2D01G156900.1	Wheat	cytosol	64.99	73.21
VIT_08s0007g00190.t01	Wine grape	cytosol	71.52	72.87
Os11t0598700-00	Rice	mitochondrion	24.62	72.77
TraesCS2D01G157000.1	Wheat	nucleus	65.33	70.14
Bra033149.1-P	Field mustard	cytosol	63.99	69.84
KRH10580	Soybean	nucleus	68.84	69.78
GSMUA_Achr11P...	Banana	cytosol	58.96	69.43
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	66.83	68.91
Zm00001d008327_P001	Maize	plasma membrane	67.17	68.78
EES02707	Sorghum	cytosol	67.17	68.66
KRH43875	Soybean	nucleus	66.5	68.45
EER99769	Sorghum	cytosol, nucleus, plastid	66.83	68.09
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	66.33	67.92
Os07t0636000-01	Rice	nucleus	67.84	67.5
Os03t0370500-02	Rice	nucleus	65.66	66.33
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	66.5	65.62
TraesCS2B01G177000.1	Wheat	nucleus	66.67	65.57
TraesCS2A01G151800.1	Wheat	cytosol	66.33	65.13
GSMUA_Achr11P...	Banana	nucleus	67.67	63.42
HORVU2Hr1G027370.1	Barley	cytosol	58.96	54.83
HORVU2Hr1G027400.5	Barley	plastid	58.46	51.1
GSMUA_Achr8P15080_001	Banana	nucleus	59.97	41.05
Solyc02g093460.2.1	Tomato	plastid	6.03	6.68

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0000495
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009506	GO:GO:0009982	GO:GO:0009987	GO:GO:0031118	GO:GO:0031120	GO:GO:0031429
GO:GO:1990481	InterPro:IPR002478	UniProt:K4BA51	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068
PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf
SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	EnsemblPlantsGene:Solyc02g081810.2	EnsemblPlants:Solyc02g081810.2.1
TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI0002767B2C	InterPro:Uncharacterised_CHP00451	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:45617169..45619434

Molecular Weight (calculated)

66782.5 Da

IEP (calculated)

9.887

GRAVY (calculated)

-0.687

Length

597 amino acids

Sequence
(BLAST)

001: MTDVELSRSE KKKKKSKSGK NDDETQTLST PIDGDFLIKP QSYTPTIDTS EWPILLKNYD RLNVRTGHYT PLPSGFSPLK RPLAEYIRYG ILNLDKPANP
101: SSHEVVAWIK RILRVEKTGH SGTLDPKVTG NLIVCIDRAT RLVKSQQGAG KEYVCVARLH SDVPDVAKVA RALEALTGAV FQRPPLISAV KRQLRIRTIY
201: ESKLLEYDAE RHLVVFWISC EAGTYVRTLC VHLGLLLGVG GHMQELRRVR SGILGEKNNM VTMHDVMDAQ WMYDNYRDET YLRRVIMPLE VVLTSYKRLV
301: VKDSAVNAIC YGAKLMIPGL LRFENDIEVG EEVVLMTTKG EAIALGIAEM TTAVMGTCDH GVVAKIKRVV MDRDTYPRKW GLGPRASMKK KLVAEGKLDK
401: HGKPNDKTPA EWTRNVVLST KEDTLVAGLA AATVKSDPDA VAADGAAVEV EKKKKKHKED DEDANKRKLD DLDVSPAPSA LKKPKVEVVE EALDKSELKK
501: EKKKKKKKEA DEAASPDVES VKKEKKKKDK ENNDVASSDE EKSEKKKKKK KKDKESENGD VGSDDEGSKS KKKDKKKKKN KDDEFVAAEV PGHRRAY

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.