Factsheet for Solyc02g093460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 1
mitochondrion 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032834	Potato	plastid	92.39	91.88
VIT_14s0066g00320.t01	Wine grape	plastid	65.31	67.69
KRH56525	Soybean	plastid	60.11	66.8
GSMUA_Achr6P06680_001	Banana	mitochondrion	49.17	62.65
CDY09856	Canola	plastid	57.33	60.71
Bra008756.1-P	Field mustard	plastid	58.07	59.96
AT5G14460.1	Thale cress	plastid	57.51	57.41
CDX69580	Canola	plastid	46.38	54.82
OQU77211	Sorghum	plastid	49.72	54.69
TraesCS1A01G024700.1	Wheat	mitochondrion	49.91	53.8
TraesCS1B01G031100.1	Wheat	mitochondrion	50.65	53.74
TraesCS1D01G024800.1	Wheat	mitochondrion	50.65	53.74
Zm00001d035698_P001	Maize	mitochondrion	49.17	53.21
HORVU1Hr1G003530.7	Barley	plastid	50.09	48.82
Solyc02g081810.2.1	Tomato	nucleus	6.68	6.03

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	ncoils:Coil	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006396	GO:GO:0006400	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:1990481	UniProt:K4BDE2
HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf
SUPFAM:SSF55120	EnsemblPlantsGene:Solyc02g093460.2	EnsemblPlants:Solyc02g093460.2.1	TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI0002768502
SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:	:	:	:

Description

No Description!

Coordinates

chr2:+:54323851..54329372

Molecular Weight (calculated)

61324.2 Da

IEP (calculated)

9.397

GRAVY (calculated)

-0.678

Length

539 amino acids

Sequence
(BLAST)

001: MAKSVVIPRM SLIFLRSKSI SQPRTVFFPS MLNSLLLKSH SLHFFSTTST PYPLQYEMII SRPANPPSPT LKSRQQRFLP KSKPNDSEPL PGSELGFDDW
101: VDRKLNLKSS SPQAEPQPEE PNSGIMEMDK GKRKYYNKRR KRMFGGSDSE DENNRDKDNE LVELKQEVVE LPTLHKKEEE LYFYDNFAYP WEKDKHYKMV
201: YQLEKKFFPD QGFDKAFLDP GQSNENVNRS KKKLGKKENL IEKDIDGGDG KSLIFFEEEE KSVSSETKKE AKVDVAEKKV EDFFKCLKKV PNKENGVVSA
301: EPFLATRSTG LPPKWDSPGG TVVLVNKPKG WTSFTVCGKL RRLTKVKKVG HAGTLDPMAT GLLIVCVGKS TKIVDSYQGM TKGYSGIFRL GEATSTWDAD
401: SPVIQREPWE HIKDEDIKKT AASFFGEIWQ VPPMFSAIKV GGEKMYDKAR RGESIELAPR RISIFEFDVK RSLDDRQNVI FRVRCSKGTY VRSLCADFGK
501: ALGSCAHLTA LRRDSIGEYT ADDAWEFKEL EEAITKGYL

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.