Factsheet for VIT_14s0066g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56525	Soybean	plastid	63.46	68.04
PGSC0003DMT400032834	Potato	plastid	68.08	65.31
Solyc02g093460.2.1	Tomato	plastid	67.69	65.31
GSMUA_Achr6P06680_001	Banana	mitochondrion	52.69	64.78
CDY09856	Canola	plastid	60.96	62.28
Bra008756.1-P	Field mustard	plastid	61.54	61.3
AT5G14460.1	Thale cress	plastid	62.5	60.19
TraesCS1A01G024700.1	Wheat	mitochondrion	55.19	57.4
CDX69580	Canola	plastid	49.81	56.8
OQU77211	Sorghum	plastid	53.46	56.73
TraesCS1B01G031100.1	Wheat	mitochondrion	54.42	55.71
TraesCS1D01G024800.1	Wheat	mitochondrion	54.42	55.71
Zm00001d035698_P001	Maize	mitochondrion	52.69	55.02
HORVU1Hr1G003530.7	Barley	plastid	54.62	51.36
VIT_08s0007g00190.t01	Wine grape	cytosol	7.12	6.31
VIT_09s0002g08600.t01	Wine grape	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

EntrezGene:100259460	wikigene:100259460	MapMan:16.6.3.2	Gene3D:3.30.2350.10	ProteinID:CCB58455	ProteinID:CCB58455.1
ncoils:Coil	UniProt:F6HUT7	EMBL:FN596252	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006396	GO:GO:0006400	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:1990481	EntrezGene:LOC100259460
wikigene:LOC100259460	HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGR:TC65580	TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI0001984B54
ArrayExpress:VIT_14s0066g00320	EnsemblPlantsGene:VIT_14s0066g00320	EnsemblPlants:VIT_14s0066g00320.t01	unigene:Vvi.11745	RefSeq:XP_002272379	RefSeq:XP_002272379.1
SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:	:	:	:

Description

No Description!

Coordinates

chr14:-:26847727..26853806

Molecular Weight (calculated)

59094.4 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.705

Length

520 amino acids

Sequence
(BLAST)

001: MAKSLPFTHV SLLFFRPKPT LSLFFKPPSL RLLTRPSSFP HLFSTTSTPH PLQYDMIISR PAQPPPPRPR RRLTPLPNSK PNDSPDAESP DSEGFENWVD
101: RKLSGSDDLQ MDKAKRKYYN KRRKRMYGSD SDEDGGAAQE KYVELKQEVV ELRTLHKKEE ELYFYDAFAY PWEKEKHYKM VYQLEKKYFP DHCLDKAFLE
201: PGETNESANN AKAKKKVGKG GEKREEIGDG GDDKGLVFFE GEKDEKVSVS AKEKELSEKK VEEFFKCLKK VPNKDVEGDR GEPYFVTRSS ELPPRWDGPS
301: GTVVLINKPK GWTSFTVCGK LRRLVQVKKV GHAGTLDPMA TGLLIVCVGK ATKLVESYQG MVKGYSGIFR LGEATSTWDA DSPVIQREPW EHIKDENIKK
401: TAASFCGEIW QVPPMFSAIK VGGEKMYEKA RRGESVELSP RRISIFKFDI ERSLDDRQNL VFRVTCSKGT YIRSLCADFG KALGSCAHLA ALRRDSIGPY
501: SADDAWEFKD LEEAITKGYF

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.