CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
endoplasmic reticulum 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035698_P001	Maize	mitochondrion	84.9	83.53
TraesCS1D01G024800.1	Wheat	mitochondrion	73.67	71.06
TraesCS1A01G024700.1	Wheat	mitochondrion	72.04	70.6
TraesCS1B01G031100.1	Wheat	mitochondrion	72.86	70.28
HORVU1Hr1G003530.7	Barley	plastid	71.22	63.11
GSMUA_Achr6P06680_001	Banana	mitochondrion	53.27	61.7
KRH56525	Soybean	plastid	56.94	57.53
CDY09856	Canola	plastid	57.96	55.8
Bra008756.1-P	Field mustard	plastid	57.96	54.41
VIT_14s0066g00320.t01	Wine grape	plastid	56.73	53.46
AT5G14460.1	Thale cress	plastid	57.76	52.41
Solyc02g093460.2.1	Tomato	plastid	54.69	49.72
CDX69580	Canola	plastid	46.12	49.56
PGSC0003DMT400032834	Potato	plastid	54.49	49.26
EER99769	Sorghum	cytosol, nucleus, plastid	8.57	7.17
EES02707	Sorghum	cytosol	7.76	6.51

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	UniProt:A0A1Z5R1C6	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	HAMAP:MF_01080	EnsemblPlants:OQU77211
ProteinID:OQU77211	ProteinID:OQU77211.1	PFAM:PF01509	PFAM:PF16198	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	EnsemblPlantsGene:SORBI_3009G007800	SUPFAM:SSF55120	TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI0001C8090C
SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:717628..722213

Molecular Weight (calculated)

55349.8 Da

IEP (calculated)

9.459

GRAVY (calculated)

-0.661

Length

490 amino acids

Sequence
(BLAST)

001: MAAAARAALL PSSSSSPSPL LRLPRRFLSL TATPYPLYYD LIVHRPADPN PPKSSASDSD RQPQPPLDEQ PLDRAKRRYL RKRRSRLLPD PDATTTTKPS
101: SSSSEFVELR PEVVDFPRLH AREEALYFHD TFAMPWEKDK HYRMLYRLEK KYFPHQSLDN AFVSADAAPA SDADRSLVFF DDEKKEDEGG ERVVSKKGGD
201: SDDKGEVLER KVEDFFRSLK KGPGQADTKA KRPGAELRQV KREVPREEER PQPYLVTRTK ELPPRWDGPA GTVVLVDKPK GWTSFTVCGK LRRLVKVQKV
301: GHAGTLDPMA TGLLIVCVGK ATKIVDSYQG MVKGYSGVFR LGEATSTWDA DSPIIQREPW EHIKDEAIRK AASSFKGEIW QVPPMFSAIK VGGEKMYDKA
401: RRGETVELSP RRISIYQFDI ERSLEDRQNL IFRVTCSKGT YIRSLCADLG KALGSCAHLT ALRRDSIGEY SVNDAWNFDE LEQQITKGYI

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.