Factsheet for TraesCS1D01G024800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G031100.1	Wheat	mitochondrion	94.69	94.69
TraesCS1A01G024700.1	Wheat	mitochondrion	91.34	92.8
OQU77211	Sorghum	plastid	71.06	73.67
HORVU1Hr1G003530.7	Barley	plastid	79.92	73.42
Zm00001d035698_P001	Maize	mitochondrion	70.87	72.29
GSMUA_Achr6P06680_001	Banana	mitochondrion	52.36	62.88
KRH56525	Soybean	plastid	55.91	58.56
VIT_14s0066g00320.t01	Wine grape	plastid	55.71	54.42
CDY09856	Canola	plastid	54.33	54.22
Bra008756.1-P	Field mustard	plastid	54.72	53.26
AT5G14460.1	Thale cress	plastid	55.31	52.04
Solyc02g093460.2.1	Tomato	plastid	53.74	50.65
PGSC0003DMT400032834	Potato	plastid	53.15	49.82
CDX69580	Canola	plastid	44.09	49.12
TraesCS2D01G156900.1	Wheat	cytosol	6.89	6.6
TraesCS2D01G157000.1	Wheat	nucleus	6.89	6.29

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198
PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00431	EnsemblPlantsGene:TraesCS1D01G024800
EnsemblPlants:TraesCS1D01G024800.1	InterPro:TruB_C	TIGR:cd02573	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:

Description

No Description!

Coordinates

chr1D:-:10383093..10387648

Molecular Weight (calculated)

56656.5 Da

IEP (calculated)

9.359

GRAVY (calculated)

-0.603

Length

508 amino acids

Sequence
(BLAST)

001: MLRSGRPAVA TAAALLLSPA APAPRLPRRF LSLTATPYPL YYDLLVHRPV KTPKSTPSDA DAAAAPRPPP ADAEGAEEKQ QPALDRAQRK YLRKRRSRQL
101: PDPDATTGTK PTTTSEMVEL RPEVVDFPRL HAREEALYFH DAFAMPWEKD KHYRMLYRLE KKYFPEQSLD NAFVAADAAA PAQPPSDADK GLVFFEEEKK
201: EGEAVGKKEG ADKGEVLERK VEEFFRALKK GPGEGKADDA STAAKKKTVL GGAPRQVKRD AEGEEEDWPR PHLASTRTEL PPRWDGPTGT VVLIDKPKGW
301: TSFTVCGKLR RLVKVQKVGH AGTLDPMATG LLIVCVGKAT KVVDRYQGMV KGYSGVFRLG EATSTWDADS PVIQRESWEH IKDEDIRKAA ASFMGEIWQV
401: PPMFSAIKVG GEKMYDKARR GESVELSPRR ISIYKFDIER SLEDRQNLIF RVTCSKGTYI RSLCADLGKA LRSCAHLTAL RRDSIGDYSV NDAWNFDELQ
501: EQITKGYL

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.