Factsheet for Bra008756.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69580	Canola	plastid	79.69	91.23
CDY09856	Canola	plastid	87.36	89.59
AT5G14460.1	Thale cress	plastid	85.06	82.22
KRH56525	Soybean	plastid	62.45	67.22
GSMUA_Achr6P06680_001	Banana	mitochondrion	51.15	63.12
VIT_14s0066g00320.t01	Wine grape	plastid	61.3	61.54
PGSC0003DMT400032834	Potato	plastid	60.73	58.49
Solyc02g093460.2.1	Tomato	plastid	59.96	58.07
OQU77211	Sorghum	plastid	54.41	57.96
TraesCS1A01G024700.1	Wheat	mitochondrion	53.07	55.4
Zm00001d035698_P001	Maize	mitochondrion	52.49	55.02
TraesCS1D01G024800.1	Wheat	mitochondrion	53.26	54.72
TraesCS1B01G031100.1	Wheat	mitochondrion	53.07	54.53
HORVU1Hr1G003530.7	Barley	plastid	51.92	49.01
Bra033149.1-P	Field mustard	cytosol	6.51	6.22
Bra003270.1-P	Field mustard	cytosol	6.32	6.03

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	EnsemblPlantsGene:Bra008756	EnsemblPlants:Bra008756.1	EnsemblPlants:Bra008756.1-P	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
UniProt:M4CX09	HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf
SUPFAM:SSF55120	TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI00025451B1	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB

Description

AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter

Coordinates

chrA10:+:13724894..13727110

Molecular Weight (calculated)

59459.5 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.749

Length

522 amino acids

Sequence
(BLAST)

001: MAKSLHFTRL MSSSARMALS SHFPFSIKPR IIHKPYFFSS TPYPLQYDMI INRPTQSSLS QPRRRPPRAI ESTSPDPAEP DFDSWVDNKL ASEREKGRPG
101: SGDPEMDKEK RKYYSKRRKR LYGSDSEDEG RRKSDEGFVE LKPEVVEFDR LHQREEELYF YDTFAYPWEK DKHYKMVYQL EKKYFPDQGL DKAFLQPGES
201: PKGDGSVKVS GKKSVAYGGK KRIDESDDGD EKLLFFDEVK DKEKEKEKEK VEESVTEKKV EQFFKGLTKS NNERGLASGG GDGEPFLVTR NGELPSRWDG
301: PNGTVLLVNK PKGWTSFTVC GKLRRIVKVK KVGHAGTLDP MATGLLIVCV GKATKVVDRY QGMIKGYSGV FRLGEATSTL DADSPVIQRE PWEHIKDDDI
401: KKALTSFLGE IWQVPPMFSA IKVGGEKMYD KARRGETVEL SPRRISIFQF DIERSLDDRQ NLIFRVVCSK GTYIRSLCAD LAKALGSCAH LTALRRDSIG
501: EYSANDAWEF NELEAAITKN YF

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.