Factsheet for GSMUA_Achr6P06680_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56525	Soybean	plastid	64.3	56.08
CDY09856	Canola	plastid	64.54	53.63
OQU77211	Sorghum	plastid	61.7	53.27
TraesCS1A01G024700.1	Wheat	mitochondrion	62.41	52.8
VIT_14s0066g00320.t01	Wine grape	plastid	64.78	52.69
TraesCS1D01G024800.1	Wheat	mitochondrion	62.88	52.36
TraesCS1B01G031100.1	Wheat	mitochondrion	62.88	52.36
Bra008756.1-P	Field mustard	plastid	63.12	51.15
Zm00001d035698_P001	Maize	mitochondrion	60.05	51.0
AT5G14460.1	Thale cress	plastid	64.3	50.37
Solyc02g093460.2.1	Tomato	plastid	62.65	49.17
PGSC0003DMT400032834	Potato	plastid	62.41	48.71
HORVU1Hr1G003530.7	Barley	plastid	62.41	47.74
CDX69580	Canola	plastid	49.65	46.05
GSMUA_Achr11P...	Banana	cytosol	8.51	7.1
GSMUA_Achr11P...	Banana	nucleus	8.04	5.34
GSMUA_Achr8P15080_001	Banana	nucleus	8.27	4.01

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0005488	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr6G06680_001	EnsemblPlants:GSMUA_Achr6P06680_001	EnsemblPlants:GSMUA_Achr6T06680_001
UniProt:M0T4R6	HAMAP:MF_01080	PFAM:PF01509	PFAM:PF16198	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120	TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI000294B482	SEG:seg
InterPro:tRNA_psdUridine_synth_TruB	:	:	:	:	:

Description

Putative tRNA pseudouridine synthase B [Source:GMGC_GENE;Acc:GSMUA_Achr6G06680_001]

Coordinates

chr6:-:4526243..4534632

Molecular Weight (calculated)

48329.4 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.719

Length

423 amino acids

Sequence
(BLAST)

001: MDRSKRRYYR KRQRRMYGGS DSEDDGRGGA DDGFVELKPE VIDFPRLHAR EEELYFYDAL AYPWEKEKHY RMVYQLEKKY FPQYSLDKAF IDPSAEPVPS
101: ASSEEGAEKK GRKSGKSKKE KDDREERDER ALIFFEETEE QKEKPAARGV TEKKVEEFFK CYSKVPKAGD RQKAVATTDT KDQGEPHLVS RKTEFPPRWD
201: GPSGTVVLVD KPKGWTSFTV CGKLRRLVKV QKVGHAGTLD PMATGLLIVC VGKATKLAER YQGMIKGYSG VFRLGEATST WDADSPVIQR EPWEHIKDED
301: IKKVAASFLG EILQVPPMFS AIKVGGEKMY EKARRGEMIE LSPRRISIYD FAIARSLDDR QNLIFRVICS KGTYIRSLCA DFGKALGSCA HLTALRRDSI
401: GEFSVDDAWS FEELQEHIVK GYF

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.