CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008756.1-P	Field mustard	plastid	91.23	79.69
CDY09856	Canola	plastid	83.99	75.25
AT5G14460.1	Thale cress	plastid	79.82	67.41
KRH56525	Soybean	plastid	57.46	54.02
VIT_14s0066g00320.t01	Wine grape	plastid	56.8	49.81
GSMUA_Achr6P06680_001	Banana	mitochondrion	46.05	49.65
PGSC0003DMT400032834	Potato	plastid	55.48	46.68
Solyc02g093460.2.1	Tomato	plastid	54.82	46.38
OQU77211	Sorghum	plastid	49.56	46.12
TraesCS1A01G024700.1	Wheat	mitochondrion	48.9	44.6
Zm00001d035698_P001	Maize	mitochondrion	48.25	44.18
TraesCS1D01G024800.1	Wheat	mitochondrion	49.12	44.09
TraesCS1B01G031100.1	Wheat	mitochondrion	48.68	43.7
HORVU1Hr1G003530.7	Barley	plastid	48.03	39.6
CDY25279	Canola	cytosol	6.8	5.89
CDY50671	Canola	cytosol	6.8	5.89
CDY33839	Canola	cytosol	6.58	5.76
CDX67680	Canola	cytosol	6.58	5.48

Protein Annotations

MapMan:16.6.3.2	Gene3D:3.30.2350.10	GO:A0A078BXS3	EnsemblPlants:CDX69580	ProteinID:CDX69580	ProteinID:CDX69580.1
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982
GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00135593001	PFAM:PF01509	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf
SUPFAM:SSF55120	TIGRFAMs:TIGR00431	UniParc:UPI0004EF2B74	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:

Description

BnaA10g19290D

Coordinates

chrLK031790:+:894953..896754

Molecular Weight (calculated)

51918.7 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.782

Length

456 amino acids

Sequence
(BLAST)

001: MAKSLHFTRL MSSSARMALS SHFPFSIKPR IIHKPYFFSS TPYPLQYDMI INRPTQSSLS QPRRRPPRAI ESTSPDPAEP DFDSWVDNKL ASEREKGRPG
101: SGDPEMDKEK RKYYSKRRKR LYGSDSEDEG RRKSDEGFVE LKPEVVEFDR LHQREEELYF YDTFAYPWEK DKHYKMVYQL EKKYFPDQGL DKAFLQPGDG
201: KKSVAYGGKK RIDESDDGDE KLLFFDEVKV KEKEKVVEES VTEKKVEQFF KGLTKSGNER GVASGGGGGG DGEPFLVTRN GELPPRWDGP NGTVLLVNKP
301: KGWTSFTVCG KLRRIVKVKK VGHAGTLDPM ATGLLMVCVG KATKVVDRYQ GMIKGYSGVF RLGEATSTLD ADSPVIQREP WDHIKDDDIK KALTSFLGEI
401: WQVPPMFSAI KVGGEKMYDK ARRGETVELS PRRISIFQFD IESPFSIKED HQPSFS

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.