Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008756.1-P | Field mustard | plastid | 82.22 | 85.06 |
| CDY09856 | Canola | plastid | 78.89 | 83.69 |
| CDX69580 | Canola | plastid | 67.41 | 79.82 |
| KRH56525 | Soybean | plastid | 60.0 | 66.8 |
| GSMUA_Achr6P06680_001 | Banana | mitochondrion | 50.37 | 64.3 |
| VIT_14s0066g00320.t01 | Wine grape | plastid | 60.19 | 62.5 |
| PGSC0003DMT400032834 | Potato | plastid | 58.15 | 57.93 |
| OQU77211 | Sorghum | plastid | 52.41 | 57.76 |
| Solyc02g093460.2.1 | Tomato | plastid | 57.41 | 57.51 |
| Zm00001d035698_P001 | Maize | mitochondrion | 51.3 | 55.62 |
| TraesCS1D01G024800.1 | Wheat | mitochondrion | 52.04 | 55.31 |
| TraesCS1A01G024700.1 | Wheat | mitochondrion | 51.11 | 55.2 |
| TraesCS1B01G031100.1 | Wheat | mitochondrion | 51.67 | 54.92 |
| HORVU1Hr1G003530.7 | Barley | plastid | 50.74 | 49.55 |
| AT3G57150.1 | Thale cress | cytosol | 6.11 | 5.84 |
Protein Annotations
| MapMan:16.6.3.2 | Gene3D:3.30.2350.10 | EntrezGene:831297 | UniProt:A0A178UDE2 | ProteinID:AED92037.1 | EMBL:AK226674 |
| ArrayExpress:AT5G14460 | EnsemblPlantsGene:AT5G14460 | RefSeq:AT5G14460 | TAIR:AT5G14460 | RefSeq:AT5G14460-TAIR-G | EnsemblPlants:AT5G14460.1 |
| TAIR:AT5G14460.1 | Unigene:At.54843 | ncoils:Coil | GO:GO:0001522 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0006396 | GO:GO:0006400 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009982 | GO:GO:0009987 | GO:GO:1990481 | HAMAP:MF_01080 |
| RefSeq:NP_196950.2 | ProteinID:OAO91798.1 | PFAM:PF01509 | PFAM:PF16198 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR13767 | InterPro:PsdUridine_synth_N | InterPro:PsdUridine_synth_cat_dom_sf | UniProt:Q0WVR7 | SUPFAM:SSF55120 | TIGRFAMs:TIGR00431 |
| InterPro:TruB_C | UniParc:UPI0000DB50A0 | SEG:seg | InterPro:tRNA_psdUridine_synth_TruB | : | : |
Description
Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
Coordinates
chr5:-:4660059..4662668
Molecular Weight (calculated)
61491.3 Da
IEP (calculated)
9.189
GRAVY (calculated)
-0.680
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.