CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P06680_001	Banana	mitochondrion	56.08	64.3
CDY09856	Canola	plastid	66.8	63.65
VIT_14s0066g00320.t01	Wine grape	plastid	68.04	63.46
Bra008756.1-P	Field mustard	plastid	67.22	62.45
Solyc02g093460.2.1	Tomato	plastid	66.8	60.11
AT5G14460.1	Thale cress	plastid	66.8	60.0
PGSC0003DMT400032834	Potato	plastid	67.01	59.96
CDX69580	Canola	plastid	54.02	57.46
OQU77211	Sorghum	plastid	57.53	56.94
TraesCS1A01G024700.1	Wheat	mitochondrion	57.94	56.2
TraesCS1B01G031100.1	Wheat	mitochondrion	58.76	56.1
TraesCS1D01G024800.1	Wheat	mitochondrion	58.56	55.91
Zm00001d035698_P001	Maize	mitochondrion	57.11	55.62
HORVU1Hr1G003530.7	Barley	plastid	58.56	51.36
KRH43875	Soybean	nucleus	7.22	6.03
KRH10580	Soybean	nucleus	7.22	5.94

Protein Annotations

EntrezGene:100793939	MapMan:16.6.3.2	Gene3D:3.30.2350.10	EMBL:ACUP02002778	EnsemblPlantsGene:GLYMA_05G002300	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006396
GO:GO:0006400	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
GO:GO:1990481	UniProt:I1K1M6	EnsemblPlants:KRH56525	ProteinID:KRH56525	ProteinID:KRH56525.1	HAMAP:MF_01080
PFAM:PF01509	PFAM:PF16198	PANTHER:PTHR13767	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SUPFAM:SSF55120
TIGRFAMs:TIGR00431	InterPro:TruB_C	UniParc:UPI0002339E03	SEG:seg	InterPro:tRNA_psdUridine_synth_TruB	:

Description

hypothetical protein

Coordinates

chr5:-:174119..180071

Molecular Weight (calculated)

55140.8 Da

IEP (calculated)

9.423

GRAVY (calculated)

-0.645

Length

485 amino acids

Sequence
(BLAST)

001: MLKASSLSFL VAMPSATASF GFFFCRQRLS SSFPFPPRPR LLSTTPTPYP LQYELIINRP SYPDSPRPPP ARPIDSPEPE LNKAQRKYYN KRRKRMYGSD
101: EDESRRPDET FVELKPEVVD FPTLHKREEE LYFYDAFTYP WEKDKHYKMV YQLEKKYFPD QCLDKAFLQP GQSNANANGK GKGRKKVVGG GGGEEKLVFF
201: EEGNVEEKGE ESGSGSRQLK EKKVEDFFKG LKKDPSPSLN KDVQVGEPFL SSRRTGLPPV WDTPHGTVLL VNKPKGWTSF TVCGKLRRLV KVKKVGHAGT
301: LDPMATGLLI VCVGKATKLV DRYQGMIKGY SGVFRLGEAT STWDADSPVI QREPWEHIKD EDIKRNALSF SGEIWQVPPM FSAIKVGGEK MYEKARRGES
401: IELSPRRISI FQFDIERSLD DRQNLIFRVT CSKGTYIRSL CADFGKALGS CAHLTALRRD SIGQYSADDA WEFQELEEAI TKNYL

Best Arabidopsis Sequence Match ( AT5G14460.1 )
(BLAST)

001: MAKSLHFTRL MSSSARMSMT SPLFFSSVKP WRNIHKPYLA SLFLSTTSTR YPLQYDMIIN RPTQSSLSQN RRRPPKAIES GAPDSAEPEF DSWVDNKLAM
101: EREQGRPGSG DPEMDKAKRK YYSKRRKRLY GSDSEDENSS RKSDEGFVEL KPEVVEFDRL HQREEELYFY DTFAYPWEKD KHYKMVYQLE KKYYPDQCLD
201: KAFLQPGEVL KKSDDSGKVR GKKKVVAALG GKRSEVKRIG MENCDEDDDK LVFFDEVKEK EEKKKSEDDV VVVTEKKVEQ FFKGLTKSPN EKGMASGGGD
301: GEPFLVTRNG ELPPRWDGPN GTVLLVNKPK GWTSFTVCGK LRRLVKVKKV GHAGTLDPMA TGLLIVCVGK ATKVVDRYQG MIKGYSGVFR LGEATSTLDA
401: DSPVIQRESW EHIKDDDIKK ALTSFLGEIW QVPPMFSAIK VGGEKMYEKA RRGETVELSP RRISIFQFDI ERSLDDRQNL IFRVICSKGT YIRSLCADLA
501: KALGSCAHLT ALRRDSIGEY SANDAWEFNE LEAAITKNYF

Arabidopsis Description

Pseudouridine synthase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WVR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.