CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19773

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	EES19773	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	90.27	90.74
EES02707	Sorghum	cytosol	89.42	89.73
TraesCS2D01G156900.1	Wheat	cytosol	79.69	88.11
Os07t0636000-01	Rice	nucleus	86.86	84.83
TraesCS2D01G157000.1	Wheat	nucleus	80.2	84.53
TraesCS2B01G177000.1	Wheat	nucleus	83.62	80.72
TraesCS2A01G151800.1	Wheat	cytosol	83.45	80.43
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	82.94	80.33
Os03t0370500-02	Rice	nucleus	80.38	79.7
Os04t0576300-01	Rice	nucleus, plastid	26.79	78.89
Os11t0598700-00	Rice	mitochondrion	26.62	77.23
CDY25279	Canola	cytosol	64.51	71.86
Bra003270.1-P	Field mustard	cytosol	66.89	71.66
CDX67680	Canola	cytosol	66.89	71.66
CDY33839	Canola	cytosol	63.31	71.21
CDY50671	Canola	cytosol	63.65	70.91
GSMUA_Achr11P...	Banana	cytosol	61.09	70.61
AT3G57150.1	Thale cress	cytosol	67.75	70.27
PGSC0003DMT400018869	Potato	cytosol	68.26	69.81
VIT_08s0007g00190.t01	Wine grape	cytosol	69.28	69.28
Bra033149.1-P	Field mustard	cytosol	63.99	68.56
KRH43875	Soybean	nucleus	67.06	67.76
KRH10580	Soybean	nucleus	67.24	66.89
Solyc02g081810.2.1	Tomato	nucleus	68.09	66.83
GSMUA_Achr11P...	Banana	nucleus	71.33	65.62
HORVU2Hr1G027370.1	Barley	cytosol	70.65	64.49
HORVU2Hr1G027400.5	Barley	plastid	70.31	60.32
GSMUA_Achr8P15080_001	Banana	nucleus	62.29	41.86
OQU77211	Sorghum	plastid	7.17	8.57

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	EntrezGene:8079384	UniProt:C5X3A6	ncoils:Coil
InterPro:Dyskerin-like	EnsemblPlants:EER99769	ProteinID:EER99769	ProteinID:EER99769.1	GO:GO:0000495	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987	GO:GO:0031118
GO:GO:0031120	GO:GO:0031429	GO:GO:1990481	InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509
PFAM:PF08068	PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N
InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136	EnsemblPlantsGene:SORBI_3002G389500	SUPFAM:SSF55120	SUPFAM:SSF88697
TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C	UniParc:UPI0001A83FAA	InterPro:Uncharacterised_CHP00451	RefSeq:XP_002463248.1
SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:74291405..74293165

Molecular Weight (calculated)

64729.9 Da

IEP (calculated)

9.611

GRAVY (calculated)

-0.611

Length

586 amino acids

Sequence
(BLAST)

001: MSSTPPAVAS PASEQTKSKK KKKHKSKDIP ATDPPSLAEA EEKTDGYLIK PQSLVPSLDT STWPLLLKNY DRLNVRTGHY TPLPSGHSPL KRPLAEHLRY
101: GVINLDKPSN PSSHEVVAWI KRILRAEKTG HSGTLDPKVT GNLIVCVDRA TRLVKSQQGA GKEYVCVARF HAAVPDTARV ARALEALTGA VFQRPPLISA
201: VKRQLRVRTI YESKLLEHDP ERHLAVFWIS CEAGTYVRTL CVHLGLLLGV GAHMQELRRV RSGILGEQDN MVTMHDVMDA MWSLDNYKDE SYLRRVVMPL
301: EVLLTSYKRL VVKDSAVNAI CYGAKLMIPG LLRFENDIET GEEVVLMTTK GEAIAIGIAE MTTAVMATCD HGAVAKIKRV VMDRDTYPRK WGLGPVALKK
401: KKMIAEGLLD KHGKPNEKTP AEWLRNVEVV LPTGGDVSIA SIAAAPEPEK VKVEQDAVIH EEVKEKKKKR QKDENNDDDA SVPAKKIKVE EAAEAVEGEK
501: SEKKKKKKKD KGESESADAV EVKEAEKADV ADEKGSEKKK KKKKSKEGSA AVDPESAEHV DGAGDEKSEK KKEKKKKKSR DTDEAE

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.