Factsheet for PGSC0003DMT400018869

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047290

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	PGSC0003DMT400047290	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081810.2.1	Tomato	nucleus	92.67	88.94
CDY25279	Canola	cytosol	69.11	75.29
CDY50671	Canola	cytosol	68.94	75.1
Bra003270.1-P	Field mustard	cytosol	71.38	74.77
CDX67680	Canola	cytosol	71.2	74.59
VIT_08s0007g00190.t01	Wine grape	cytosol	76.27	74.57
Os04t0576300-01	Rice	nucleus, plastid	25.83	74.37
CDY33839	Canola	cytosol	67.54	74.28
AT3G57150.1	Thale cress	cytosol	71.9	72.92
TraesCS2D01G156900.1	Wheat	cytosol	67.02	72.45
Os11t0598700-00	Rice	mitochondrion	25.48	72.28
Bra033149.1-P	Field mustard	cytosol	68.06	71.3
TraesCS2D01G157000.1	Wheat	nucleus	68.06	70.14
KRH10580	Soybean	nucleus	72.08	70.12
KRH43875	Soybean	nucleus	70.51	69.66
GSMUA_Achr11P...	Banana	cytosol	61.61	69.63
Zm00001d008327_P001	Maize	plasma membrane	69.98	68.78
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	69.46	68.74
EES02707	Sorghum	cytosol	69.81	68.49
EER99769	Sorghum	cytosol, nucleus, plastid	69.81	68.26
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	68.59	67.41
Os07t0636000-01	Rice	nucleus	70.33	67.17
Os03t0370500-02	Rice	nucleus	68.06	65.99
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	69.46	65.79
TraesCS2B01G177000.1	Wheat	nucleus	69.63	65.73
TraesCS2A01G151800.1	Wheat	cytosol	69.28	65.3
GSMUA_Achr11P...	Banana	nucleus	68.59	61.7
HORVU2Hr1G027370.1	Barley	cytosol	61.26	54.67
HORVU2Hr1G027400.5	Barley	plastid	60.73	50.95
GSMUA_Achr8P15080_001	Banana	nucleus	60.73	39.91
PGSC0003DMT400032834	Potato	plastid	6.63	7.01

Protein Annotations

EntrezGene:102596957	MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009506	GO:GO:0009982	GO:GO:0009987	InterPro:IPR002478	UniProt:M1AB98	PFAM:PF01472
PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	EnsemblPlantsGene:PGSC0003DMG400007315	PGSC:PGSC0003DMG400007315	EnsemblPlants:PGSC0003DMT400018869
PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359
SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C
UniParc:UPI0002952709	InterPro:Uncharacterised_CHP00451	RefSeq:XP_006363181.1	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:

Description

H/ACA ribonucleoprotein complex subunit 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400007315]

Coordinates

chr2:+:37530115..37532382

Molecular Weight (calculated)

64363.7 Da

IEP (calculated)

9.891

GRAVY (calculated)

-0.744

Length

573 amino acids

Sequence
(BLAST)

001: MTDVELSRSE KKKKKSKSGK NEDETQTLST PIDGDFLIKP QSYTPTIDTS EWPILLKNYD RLNVRTGHYT PLPSGYSPLK RPLAEYIRYG ILNLDKPANP
101: SSHEVVAWIK RILRVEKTGH SGTLDPKVTG NLIVCIDRAT RLVKSQQGAG KEYVCVARLH SDVPDVAKVA RALEALTGAV FQRPPLISAV KRQLRIRTIY
201: ESKLLEYDAD RHLVVFWISC EAGTYVRTLC VHLGLLLGVG GHMQELRRVR SGILGEKNNM VTMHDVMDAQ WMYDNYRDET YLRRVIMPLE VVLTSYKRLV
301: VKDSAVNAIC YGAKLMIPGL LRFENDIEVG EEVVLMTTKG EAIALGIAEM TTAVMGTCDH GVVAKIKRVV MDRDTYPRKW GLGPRASMKK KLVAEGKLDK
401: HGKPNDKTPA EWSRNVVLST KEDTMVAGLA AAADGEIEKK KKKHKEDDEE ANKRKLDDLD VSPAPSALKK PKVELVEEAV EKSELKKEKK KKKKKEADEA
501: GSPDVESLKK EKKKKDKENN DAASSDEEKS EKKKKKKKKD KESENGDVGS DDEGSKSKKK EKKKKKNKDA QEE

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.