Factsheet for VIT_08s0007g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0059g01970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	VIT_12s0059g01970.t01	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018869	Potato	cytosol	74.57	76.27
Os04t0576300-01	Rice	nucleus, plastid	25.09	73.87
CDY25279	Canola	cytosol	66.21	73.76
CDY50671	Canola	cytosol	66.21	73.76
TraesCS2D01G156900.1	Wheat	cytosol	66.55	73.58
CDY33839	Canola	cytosol	65.19	73.32
Bra003270.1-P	Field mustard	cytosol	68.43	73.31
CDX67680	Canola	cytosol	68.26	73.13
AT3G57150.1	Thale cress	cytosol	70.48	73.1
GSMUA_Achr11P...	Banana	cytosol	62.12	71.79
TraesCS2D01G157000.1	Wheat	nucleus	68.09	71.76
EES02707	Sorghum	cytosol	71.5	71.75
KRH43875	Soybean	nucleus	70.82	71.55
Solyc02g081810.2.1	Tomato	nucleus	72.87	71.52
Zm00001d008327_P001	Maize	plasma membrane	70.48	70.84
KRH10580	Soybean	nucleus	71.16	70.8
Os11t0598700-00	Rice	mitochondrion	24.4	70.79
Zm00001d040293_P001	Maize	cytosol, nucleus, plastid	69.8	70.64
Bra033149.1-P	Field mustard	cytosol	65.53	70.2
EER99769	Sorghum	cytosol, nucleus, plastid	69.28	69.28
Os03t0370500-02	Rice	nucleus	69.28	68.7
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	68.09	68.44
TraesCS2B01G177000.1	Wheat	nucleus	70.14	67.71
Os07t0636000-01	Rice	nucleus	69.11	67.5
TraesCS2A01G151800.1	Wheat	cytosol	69.97	67.43
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	69.45	67.27
GSMUA_Achr11P...	Banana	nucleus	69.62	64.05
HORVU2Hr1G027370.1	Barley	cytosol	60.24	54.98
VIT_09s0002g08600.t01	Wine grape	cytosol, nucleus, peroxisome	7.34	52.44
HORVU2Hr1G027400.5	Barley	plastid	60.07	51.54
GSMUA_Achr8P15080_001	Banana	nucleus	61.09	41.05
VIT_14s0066g00320.t01	Wine grape	plastid	6.31	7.12

Protein Annotations

EntrezGene:100258019	wikigene:100258019	MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ProteinID:CCB55597
ProteinID:CCB55597.1	ncoils:Coil	InterPro:Dyskerin-like	UniProt:F6HLD3	EMBL:FN595991	GO:GO:0000495
GO:GO:0001522	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139
GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009982	GO:GO:0009987
GO:GO:0031118	GO:GO:0031120	GO:GO:0031429	GO:GO:1990481	InterPro:IPR002478	EntrezGene:LOC100258019
wikigene:LOC100258019	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068	PFAM:PF16198	PFscan:PS50890
InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf	SMART:SM00359	SMART:SM01136
SUPFAM:SSF55120	SUPFAM:SSF88697	TIGR:TC64914	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451	InterPro:TruB_C
UniParc:UPI00015C9EAD	InterPro:Uncharacterised_CHP00451	ArrayExpress:VIT_08s0007g00190	EnsemblPlantsGene:VIT_08s0007g00190	EnsemblPlants:VIT_08s0007g00190.t01	unigene:Vvi.14591
RefSeq:XP_002270073	RefSeq:XP_002270073.1	SEG:seg	InterPro:tRNA_PsdUridine_synth_B_fam	:	:

Description

No Description!

Coordinates

chr8:-:14560780..14563936

Molecular Weight (calculated)

65738.2 Da

IEP (calculated)

9.570

GRAVY (calculated)

-0.649

Length

586 amino acids

Sequence
(BLAST)

001: MSELELSRSE KKKKKNKSRT EALDVVEFGS DPTQKDGEFL IKPQSFTPSL DTSQWPILLK NYDRLNVRTG HYTPLPSGYS PLKRPLAEYI RYGILNLDKP
101: ANPSSHEVVA WIKRILRVEK TGHSGTLDPK VTGNLIVCID RATRLVKSQQ GAGKEYVCVA RLHSSVPDVA KVARALETLT GAVFQRPPLI SAVKRQLRIR
201: TIYESKLLEY DPDRHLVVFW ISCEAGTYVR TLCVHLGLIL GVGGHMQELR RVRSGILGEK DNMVTMHDVM DAQWVYDNYR DESYLRRVIM PLEVVLTSYK
301: RLVVKDSAVN AICYGAKLMI PGLLRFENEI ENGEEVVLMT TKGEAIALGI AEMTTAVMAT CDHGVVARIK RVVMDRDTYP RKWGLGPRAA MKKKLITEGK
401: LNKHGKPNEN TPSEWLRNVV LPTGGDSMVA SLAAAVEPTV KAETDVKEEI DGEQRKRKLN ESTDDPVTVP AKKIKKEIEE VSEFVETEKK EKKKKKKKEK
501: ENGDAALSDE EKAVKVKIEE DEDKDEAVTV DKEKSEKKKK KKKNKEAEDG TASGSPMGIS GGDAEADKSE KKKKKKKKNK DAEEED

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.