Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_08s0007g00190.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | VIT_08s0007g00190.t01 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56025 | Soybean | mitochondrion, nucleus | 21.97 | 42.74 |
| KRH25503 | Soybean | nucleus | 31.69 | 39.47 |
| PGSC0003DMT400047290 | Potato | nucleus | 36.62 | 34.99 |
| Solyc07g054460.2.1 | Tomato | nucleus | 33.8 | 30.85 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 25.92 | 30.62 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 22.82 | 30.22 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 27.04 | 30.05 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 24.65 | 29.71 |
| CDY15463 | Canola | nucleus | 23.52 | 29.56 |
| Os05t0502800-01 | Rice | nucleus | 28.03 | 29.22 |
| CDY64129 | Canola | nucleus | 28.87 | 28.95 |
| CDY51392 | Canola | nucleus | 27.04 | 27.55 |
| HORVU6Hr1G056850.1 | Barley | plastid | 26.34 | 26.83 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 25.92 | 26.47 |
| EES19773 | Sorghum | nucleus | 25.92 | 25.17 |
| AT1G03530.1 | Thale cress | nucleus | 28.31 | 25.09 |
| Zm00001d038622_P001 | Maize | plastid | 25.07 | 23.7 |
| TraesCS1A01G322700.1 | Wheat | plastid | 27.18 | 22.06 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 27.75 | 21.91 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 27.89 | 21.36 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 27.18 | 20.89 |
Protein Annotations
| EntrezGene:104880882 | MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | EMBL:AM427259 | ProteinID:CAN75706 | ProteinID:CAN75706.1 |
| ProteinID:CCB52023 | ProteinID:CCB52023.1 | ncoils:Coil | UniProt:F6HIH7 | EMBL:FN595765 | GO:GO:0001522 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf |
| InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 | PFAM:PF04410 | SUPFAM:SSF50447 | TIGR:TC69771 | InterPro:Transl_B-barrel_sf |
| UniParc:UPI0001984573 | ArrayExpress:VIT_12s0059g01970 | EnsemblPlantsGene:VIT_12s0059g01970 | EnsemblPlants:VIT_12s0059g01970.t01 | unigene:Vvi.4297 | RefSeq:XP_010657283.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:6821486..6825031
Molecular Weight (calculated)
76749.8 Da
IEP (calculated)
4.231
GRAVY (calculated)
-0.831
Length
710 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGFVSGDLN QGSKLKDSDD PLDPYEKIDD CGLNFADSFL DFENIDKWIE EMSEPDGVGS EKVQLAGAEK CTEMAEEGSC KETTFGGPIA DGSKPSVNSS
101: EQILDGSDGC AKKLGGESMK FGNLGSLIEE EMGKVSLVGL EKDSVRVGGD GMESGHLVNN SDTLKTDDLV RDGDESESSS ESESSTSSSS SSSSSRSGDD
201: DDDPAEEEEE KEEKEEKEGG EEEKEVMGVE GEVEEGEIRD DYGHHDDDLE EDDDDDEEEE EEEEEEMIAG SDYDGEDDSC GNVKGGAIKS KNEIEALPPV
301: PPLDVTLQPH HQTLPVGVVS SIIGAKVIVE GAEKHKPLTE GSILWITESR SPLGLVDEIF GPVKNPYYVV RYNSDSEVPA GINEGTFISF VPEFANHILN
401: ERNLYKKGYD ASGENDEEVS DVEFSDDEEE AEHKKTLKMI KRGTNDQKPG NKKNKRKKVK NRDGAWKNGQ HSTAADQFFD DKHSKTPDHD QHHTPQVAAS
501: SPFGVGQFFA GGGLVPPYPQ MAQVAGFIPP PSGIWASGIM PCQQQQNTVF PNSFPTDTLP WPPQNHHPHP FQMPMPNGML FQQQFDPGHA AFPNAVLSSG
601: QANFFMRPTY PPWPGLGAQS GLNQAAFGMG LQGQHARPII SAGEQGALSS GLPMGQSCDV QPPAVTQGKI QASQQFNQRA SFGRGKKPFH RGGGRFAGGR
701: GGGRGQQQSK
101: EQILDGSDGC AKKLGGESMK FGNLGSLIEE EMGKVSLVGL EKDSVRVGGD GMESGHLVNN SDTLKTDDLV RDGDESESSS ESESSTSSSS SSSSSRSGDD
201: DDDPAEEEEE KEEKEEKEGG EEEKEVMGVE GEVEEGEIRD DYGHHDDDLE EDDDDDEEEE EEEEEEMIAG SDYDGEDDSC GNVKGGAIKS KNEIEALPPV
301: PPLDVTLQPH HQTLPVGVVS SIIGAKVIVE GAEKHKPLTE GSILWITESR SPLGLVDEIF GPVKNPYYVV RYNSDSEVPA GINEGTFISF VPEFANHILN
401: ERNLYKKGYD ASGENDEEVS DVEFSDDEEE AEHKKTLKMI KRGTNDQKPG NKKNKRKKVK NRDGAWKNGQ HSTAADQFFD DKHSKTPDHD QHHTPQVAAS
501: SPFGVGQFFA GGGLVPPYPQ MAQVAGFIPP PSGIWASGIM PCQQQQNTVF PNSFPTDTLP WPPQNHHPHP FQMPMPNGML FQQQFDPGHA AFPNAVLSSG
601: QANFFMRPTY PPWPGLGAQS GLNQAAFGMG LQGQHARPII SAGEQGALSS GLPMGQSCDV QPPAVTQGKI QASQQFNQRA SFGRGKKPFH RGGGRFAGGR
701: GGGRGQQQSK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.