Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G230600.1 | Wheat | nucleus | 84.38 | 82.7 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 81.15 | 68.78 |
| HORVU6Hr1G056850.1 | Barley | plastid | 75.55 | 63.85 |
| Os05t0502800-01 | Rice | nucleus | 57.73 | 49.93 |
| EES19773 | Sorghum | nucleus | 51.78 | 41.72 |
| Zm00001d038622_P001 | Maize | plastid | 49.92 | 39.15 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 57.56 | 37.71 |
| KRH56025 | Soybean | mitochondrion, nucleus | 20.54 | 33.15 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 29.2 | 32.09 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 32.77 | 30.2 |
| KRH25503 | Soybean | nucleus | 27.84 | 28.77 |
| CDY15463 | Canola | nucleus | 24.28 | 25.31 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 29.71 | 24.65 |
| PGSC0003DMT400047290 | Potato | nucleus | 29.54 | 23.42 |
| CDY51392 | Canola | nucleus | 27.5 | 23.24 |
| Solyc07g054460.2.1 | Tomato | nucleus | 30.39 | 23.01 |
| CDY64129 | Canola | nucleus | 26.83 | 22.32 |
| AT1G03530.1 | Thale cress | nucleus | 29.88 | 21.97 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G251300.1 | EnsemblPlantsGene:TraesCS6B01G251300 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PANTHER:PTHR31633 | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 |
Description
No Description!
Coordinates
chr6B:-:450638484..450641230
Molecular Weight (calculated)
63454.8 Da
IEP (calculated)
4.446
GRAVY (calculated)
-0.870
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSEVLAKEV LKDGGGKGEE GSKDEAAVRA EMKEEVEGGG SKGEDQSNGE ASVDAEMNSE VSAKVETENG GSKGKEESEA EEEDGESGEA TSSSEEEEEE
101: EEESSEASSS SDEEEQRANN HCGVGDMAAL IEEGKLMVGI NDDDDEEEEE EEEEASKGHI NSKHEAEILP PVPKIEVQLE PHHKALPVGT ISSIMGERVI
201: VEGSVQHNPL NEGSILWITE SRTPLGIVEE LFGPVKSPYY LVRYNSVEEV PSGISAGTAV SFVMEFANHI LNVKELYTKG YDGSGDNIED QTDDPEFSDD
301: EKEAEYKRSL RLAKGQTDRQ LDSKKRSGDK KRKQPRDAGF HKGIPRTHDV ATPAHQSKHR IYRSDMAPVA DKSGRSRTSV PIMTPPVTVN PAMASAIQFA
401: DQKGGCFPNP SQQFLPQQPN VWPCGFPPSM YPNMGINGAA LAANIMQNIL SGSNQYQQHY QNQNFGGFFN GIPMTPTQFI PQSGIPVNQM PFGGPQVNPP
501: FGPTSELGMG QGNFGNLGYL AGDQGLPHPG LPNAQGYGRL PSSHGGGGQR PMQFNSGQFN QGSSSFSGRR PQQQGGQHSQ GRGSGGHHK
101: EEESSEASSS SDEEEQRANN HCGVGDMAAL IEEGKLMVGI NDDDDEEEEE EEEEASKGHI NSKHEAEILP PVPKIEVQLE PHHKALPVGT ISSIMGERVI
201: VEGSVQHNPL NEGSILWITE SRTPLGIVEE LFGPVKSPYY LVRYNSVEEV PSGISAGTAV SFVMEFANHI LNVKELYTKG YDGSGDNIED QTDDPEFSDD
301: EKEAEYKRSL RLAKGQTDRQ LDSKKRSGDK KRKQPRDAGF HKGIPRTHDV ATPAHQSKHR IYRSDMAPVA DKSGRSRTSV PIMTPPVTVN PAMASAIQFA
401: DQKGGCFPNP SQQFLPQQPN VWPCGFPPSM YPNMGINGAA LAANIMQNIL SGSNQYQQHY QNQNFGGFFN GIPMTPTQFI PQSGIPVNQM PFGGPQVNPP
501: FGPTSELGMG QGNFGNLGYL AGDQGLPHPG LPNAQGYGRL PSSHGGGGQR PMQFNSGQFN QGSSSFSGRR PQQQGGQHSQ GRGSGGHHK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.