CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67680
CDY25279
CDY33839
CDY50671

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03530.1	CDX67680	AT3G57150.1	17712600
AT1G03530.1	CDY25279	AT3G57150.1	17712600
AT1G03530.1	CDY33839	AT3G57150.1	17712600
AT1G03530.1	CDY50671	AT3G57150.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51392	Canola	nucleus	65.31	52.94
CDY64129	Canola	nucleus	45.66	36.44
AT1G03530.1	Thale cress	nucleus	50.62	35.71
KRH25503	Soybean	nucleus	30.27	30.0
KRH56025	Soybean	mitochondrion, nucleus	18.94	29.32
GSMUA_Achr5P00860_001	Banana	nucleus	24.78	26.12
TraesCS6A01G230600.1	Wheat	nucleus	26.55	24.96
TraesCS6B01G251300.1	Wheat	nucleus	25.31	24.28
VIT_12s0059g01970.t01	Wine grape	nucleus	29.56	23.52
Os05t0502800-01	Rice	nucleus	27.79	23.05
GSMUA_Achr9P12240_001	Banana	cytosol	24.96	22.07
PGSC0003DMT400047290	Potato	nucleus	28.67	21.8
EES19773	Sorghum	nucleus	27.08	20.93
HORVU6Hr1G056850.1	Barley	plastid	25.66	20.8
Solyc07g054460.2.1	Tomato	nucleus	28.5	20.69
TraesCS6D01G204400.1	Wheat	mitochondrion, nucleus	24.6	20.0
Zm00001d038622_P001	Maize	plastid	26.19	19.71
TraesCS1A01G322700.1	Wheat	plastid	27.96	18.06
TraesCS1B01G335000.1	Wheat	cytosol, mitochondrion	27.43	17.24
HORVU1Hr1G065830.1	Barley	extracellular, nucleus, plastid	28.14	17.21
TraesCS1D01G323100.1	Wheat	cytosol	27.96	17.04

Protein Annotations

EnsemblPlants:CDY15463	EnsemblPlantsGene:GSBRNA2T00089631001	Gene3D:2.40.10.230	GO:A0A078FT36	GO:GO:0001522	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0042254	InterPro:Gar1/Naf1_Cbf5-bd_sf	InterPro:H/ACA_rnp_Gar1/Naf1
InterPro:IPR038664	InterPro:Transl_B-barrel_sf	ncoils:Coil	PFAM:PF04410	ProteinID:CDY15463	ProteinID:CDY15463.1
SEG:seg	SUPFAM:SSF50447	UniParc:UPI0004EF258B	UniProt:A0A078FT36	MapMan:17.1.1.2.2.1.4	:

Description

BnaA08g27470DBnaA08g27470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT36]

Coordinates

chrLK032055:-:129707..131821

Molecular Weight (calculated)

63966.3 Da

IEP (calculated)

4.351

GRAVY (calculated)

-1.072

Length

565 amino acids

Sequence
(BLAST)

001: MSANFDGVAE PAVKESEPVV SKDARPMEDE KVETSSAESE SETLSSSSSS SASSSSEEEE EESDEDESEE ESNKKKKFED QMVMGKEDDM AEELEEGEIR
101: SVDEEHEVEE DDVNEMVAWS NDEDEDLGWQ TNEPLRTKNE LKELPPVPPV DVTLEPHHVM LPLGVVLSVM STQVTVGGME EHGPLAEGSI LWLTERRTPL
201: GLVDEIFGQV ECPLYSVRFN SENEVPEGVS EGTPVSYVAD YAQHILNIKE LQKKGYDTSG DNDKEIAEEL EFSDDEKEAQ YRKTQKMEKR GMMDDQKDGN
301: TRNKKKKNSD LGTSTSNDSR EWTENRGSSS LSSIRSDPQM GGPVTNHQPR PRMEGFPPNG GGWRPQSNQQ NSHQFPPMPS QMTIPNLPPP MRRPMMAMQN
401: QMMFRPQFNG GQLPMPAGPG GLNFFQGQAT APWPALVGQN CFNQRPFGMG RGIQPPQFPM NPQFQMLNNR PQAPFPVNPQ FQMRNNNRPQ SPVNPYFQMQ
501: PQFPMNPQFQ MRNNNRPQSP VNPYFQMQPQ FQMLNNNRSQ SPMNPRCQMQ PQSQGWKGPP WSWQR

Best Arabidopsis Sequence Match ( AT1G03530.1 )
(BLAST)

001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G

Arabidopsis Description

ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.