Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 85.98 | 88.65 |
| TraesCS1A01G322700.1 | Wheat | plastid | 74.87 | 79.31 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 73.57 | 73.81 |
| Os05t0502800-01 | Rice | nucleus | 41.21 | 56.09 |
| EES19773 | Sorghum | nucleus | 40.35 | 51.16 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 37.54 | 50.07 |
| Zm00001d038622_P001 | Maize | plastid | 39.16 | 48.34 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 24.49 | 35.52 |
| KRH56025 | Soybean | mitochondrion, nucleus | 13.92 | 35.34 |
| KRH25503 | Soybean | nucleus | 19.63 | 31.93 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 18.45 | 31.9 |
| CDY15463 | Canola | nucleus | 17.04 | 27.96 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 21.36 | 27.89 |
| Solyc07g054460.2.1 | Tomato | nucleus | 22.55 | 26.86 |
| CDY64129 | Canola | nucleus | 20.5 | 26.84 |
| PGSC0003DMT400047290 | Potato | nucleus | 21.47 | 26.78 |
| AT1G03530.1 | Thale cress | nucleus | 22.01 | 25.47 |
| CDY51392 | Canola | nucleus | 18.99 | 25.25 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G323100.1 | EnsemblPlantsGene:TraesCS1D01G323100 | Gene3D:2.40.10.230 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 |
| InterPro:Transl_B-barrel_sf | PFAM:PF04410 | SEG:seg | SUPFAM:SSF50447 | MapMan:17.1.1.2.2.1.4 | : |
Description
No Description!
Coordinates
chr1D:-:416098486..416102366
Molecular Weight (calculated)
95314.2 Da
IEP (calculated)
4.335
GRAVY (calculated)
-0.609
Length
927 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPLRNPTP TPTPTPTTHG XXXXXXXXXX XXXXXXXXXX XXXXXFDPVE EWLLDDFDFD QAMASELAKS FGLGEAAAGP GGIDFASGSG GLGLDQIVKL
101: GEGEVAAEEK GGPPGLLDAP RGVLLEVKKE AVMLLGGGLG GELGPGQAPV LGIGDFVAEG DSLEAAIDAD MCTIAAGDAD ASTVAAVHAA VSTVAPVDAE
201: MSAVAAVAAD NSTMSAVDAD TSAVAAVHAE TSTGASVDAE MSAVGAVDAD TSTVAAVDAD TSTIASVDAE MSSGTMVNEE VERGGGKWEE ESKDKESESS
301: EDEELSEASS SSDDDEEEPA KNDEESSEAS LSSDDEVPVA KKHSGPSDME ALLEEGELMV GVDDGDDDET PKGPIKSKHE VEVLPPVPNI EVQLEPHHKA
401: LPVGTITAIM GERVIVEGSV EHSPLTEGSI LWITESRTPL GIVDEIFGPV KNPYYLVRYN SAEEVPAGIS AGTTVCFVAE FADHILNMKE LYAKGYDESA
501: DHDEEADEPE FSDDEQEAEY KRSLRLVKRQ TDRPHDSKKP SGDKKRVQTR GAGFRNDMPP RTHDTPTSGH QSQRRFHRSD MADSVTHQLG QQNYPMSTPR
601: DMSPRIHDAS TPDRRPQPRF HRSDMATAVA DSTTRQTGPQ NFPMSAPTML PSISMNHAMP SPVQLANQMG SCFINPQQFS QQPNMVWPGG LPPPGQPNMG
701: VDGAALAANI MQNILMGANQ FQQYLQNQNF GGFPNGMPMA QQQFMPGSTM SANMMPFGGP PVNHPFGQAS QFPMGQGNFG QFPHMANQGP PAGFPNTQGF
801: GRFPSQHEDG DQPPGNANMQ GHGRLPSPHG DGGQPPMQFN SLPSPHGDGG QPPMQFNSLP SPHGDGGQPP MQFNSLPSPR GDGGQPPMQF NSGHFNQGNS
901: SFRGRRPQQR GGRHSPGRGG GSGRHRK
101: GEGEVAAEEK GGPPGLLDAP RGVLLEVKKE AVMLLGGGLG GELGPGQAPV LGIGDFVAEG DSLEAAIDAD MCTIAAGDAD ASTVAAVHAA VSTVAPVDAE
201: MSAVAAVAAD NSTMSAVDAD TSAVAAVHAE TSTGASVDAE MSAVGAVDAD TSTVAAVDAD TSTIASVDAE MSSGTMVNEE VERGGGKWEE ESKDKESESS
301: EDEELSEASS SSDDDEEEPA KNDEESSEAS LSSDDEVPVA KKHSGPSDME ALLEEGELMV GVDDGDDDET PKGPIKSKHE VEVLPPVPNI EVQLEPHHKA
401: LPVGTITAIM GERVIVEGSV EHSPLTEGSI LWITESRTPL GIVDEIFGPV KNPYYLVRYN SAEEVPAGIS AGTTVCFVAE FADHILNMKE LYAKGYDESA
501: DHDEEADEPE FSDDEQEAEY KRSLRLVKRQ TDRPHDSKKP SGDKKRVQTR GAGFRNDMPP RTHDTPTSGH QSQRRFHRSD MADSVTHQLG QQNYPMSTPR
601: DMSPRIHDAS TPDRRPQPRF HRSDMATAVA DSTTRQTGPQ NFPMSAPTML PSISMNHAMP SPVQLANQMG SCFINPQQFS QQPNMVWPGG LPPPGQPNMG
701: VDGAALAANI MQNILMGANQ FQQYLQNQNF GGFPNGMPMA QQQFMPGSTM SANMMPFGGP PVNHPFGQAS QFPMGQGNFG QFPHMANQGP PAGFPNTQGF
801: GRFPSQHEDG DQPPGNANMQ GHGRLPSPHG DGGQPPMQFN SLPSPHGDGG QPPMQFNSLP SPHGDGGQPP MQFNSLPSPR GDGGQPPMQF NSGHFNQGNS
901: SFRGRRPQQR GGRHSPGRGG GSGRHRK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.