Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | KRH10580 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | KRH43875 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56025 | Soybean | mitochondrion, nucleus | 52.46 | 81.92 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 39.47 | 31.69 |
| CDY15463 | Canola | nucleus | 30.0 | 30.27 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 26.67 | 28.36 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 29.65 | 28.12 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 31.4 | 28.01 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 28.77 | 27.84 |
| CDY64129 | Canola | nucleus | 34.04 | 27.4 |
| PGSC0003DMT400047290 | Potato | nucleus | 35.09 | 26.92 |
| Os05t0502800-01 | Rice | nucleus | 31.93 | 26.73 |
| Solyc07g054460.2.1 | Tomato | nucleus | 35.79 | 26.22 |
| CDY51392 | Canola | nucleus | 31.75 | 25.97 |
| EES19773 | Sorghum | nucleus | 31.4 | 24.49 |
| HORVU6Hr1G056850.1 | Barley | plastid | 29.47 | 24.1 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 28.6 | 23.45 |
| AT1G03530.1 | Thale cress | nucleus | 32.28 | 22.97 |
| Zm00001d038622_P001 | Maize | plastid | 30.0 | 22.77 |
| TraesCS1A01G322700.1 | Wheat | plastid | 32.63 | 21.26 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 32.98 | 20.35 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 31.75 | 20.13 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 31.93 | 19.63 |
Protein Annotations
| EntrezGene:102660668 | MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | EMBL:ACUP02007268 | EnsemblPlantsGene:GLYMA_12G108100 | GO:GO:0001522 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf |
| InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 | UniProt:K7LU49 | EnsemblPlants:KRH25503 | ProteinID:KRH25503 | ProteinID:KRH25503.1 |
| PFAM:PF04410 | PANTHER:PTHR31633 | SUPFAM:SSF50447 | InterPro:Transl_B-barrel_sf | UniParc:UPI000295FB0D | SEG:seg |
Description
hypothetical protein
Coordinates
chr12:-:9922937..9925635
Molecular Weight (calculated)
61669.6 Da
IEP (calculated)
4.298
GRAVY (calculated)
-0.810
Length
570 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFQHENGSN IDPNPIGVET AMASQHENGS EIDPNPTGVE TSMSSLHENG SEIDQNLIGA EAHEAEAEKF GTLGCAGPIE EGLEKITLVG SSLSVEENGV
101: KDDSEIEVEI ESESESENSE SESPSSDSGS GSSSSSSDSS SDSEDTDDDD KDDDVEVEEG EISGSDEEKM VSWSMADEDD DEDGDVGGGP IRSKNELQNL
201: PPVPPVDVTL EPHHQTLPVG IVTSILGAQV IVEGVEKHGP LNEGSILWLT ESRKPLGLID EIFGPVKNPY YVVRYNSESE VPTGIHEGTL ISFVPEFADH
301: VLNNKDLYRK GYDASGADDE ELSDEMEFSD DEKEAEYKRM QKQTKRGAND QNHGKKKNNR KKFSPKEHAA PTIHAAPMLH HGNCPPFSGT GQGLMGGTTP
401: LPPLNVAPTF ATNGVWTNGT TFPHQQQSPM LPNGYPTNGM PWYPQNPQIS PQFPMPGIPF QQQLHPNQGS LPTTMLPGMP DMFAQSQYAA GLAGQNQMAF
501: GMGSPFPQSQ PPMFAAQQGF PSTELHSQRN LNFHSNTISG ARSQFHPRSN ANRGRKTFHG AGRKGWRPPK
101: KDDSEIEVEI ESESESENSE SESPSSDSGS GSSSSSSDSS SDSEDTDDDD KDDDVEVEEG EISGSDEEKM VSWSMADEDD DEDGDVGGGP IRSKNELQNL
201: PPVPPVDVTL EPHHQTLPVG IVTSILGAQV IVEGVEKHGP LNEGSILWLT ESRKPLGLID EIFGPVKNPY YVVRYNSESE VPTGIHEGTL ISFVPEFADH
301: VLNNKDLYRK GYDASGADDE ELSDEMEFSD DEKEAEYKRM QKQTKRGAND QNHGKKKNNR KKFSPKEHAA PTIHAAPMLH HGNCPPFSGT GQGLMGGTTP
401: LPPLNVAPTF ATNGVWTNGT TFPHQQQSPM LPNGYPTNGM PWYPQNPQIS PQFPMPGIPF QQQLHPNQGS LPTTMLPGMP DMFAQSQYAA GLAGQNQMAF
501: GMGSPFPQSQ PPMFAAQQGF PSTELHSQRN LNFHSNTISG ARSQFHPRSN ANRGRKTFHG AGRKGWRPPK
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.