Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0370500-02 | |
| Os04t0576300-01 | |
| Os07t0636000-01 | |
| Os11t0598700-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | Os03t0370500-02 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | Os04t0576300-01 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | Os07t0636000-01 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | Os11t0598700-00 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G251300.1 | Wheat | nucleus | 49.93 | 57.73 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 50.22 | 56.91 |
| EES19773 | Sorghum | nucleus | 56.09 | 52.26 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 53.01 | 51.94 |
| HORVU6Hr1G056850.1 | Barley | plastid | 51.69 | 50.5 |
| Zm00001d038622_P001 | Maize | plastid | 54.04 | 49.0 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 58.74 | 44.49 |
| TraesCS1A01G322700.1 | Wheat | plastid | 55.07 | 42.86 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 58.0 | 42.75 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 56.09 | 41.21 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 27.61 | 35.07 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 32.6 | 34.74 |
| KRH56025 | Soybean | mitochondrion, nucleus | 18.5 | 34.52 |
| KRH25503 | Soybean | nucleus | 26.73 | 31.93 |
| CDY64129 | Canola | nucleus | 29.22 | 28.11 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 29.22 | 28.03 |
| CDY15463 | Canola | nucleus | 23.05 | 27.79 |
| PGSC0003DMT400047290 | Potato | nucleus | 28.05 | 25.71 |
| Solyc07g054460.2.1 | Tomato | nucleus | 28.93 | 25.32 |
| AT1G03530.1 | Thale cress | nucleus | 28.93 | 24.59 |
| CDY51392 | Canola | nucleus | 25.11 | 24.53 |
Protein Annotations
| MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | EntrezGene:4339246 | ProteinID:AAU90236.1 | EMBL:AK065486 | ProteinID:BAF17890.1 |
| ProteinID:BAS94780.1 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 | EnsemblPlantsGene:Os05g0502800 | EnsemblPlants:Os05t0502800-01 |
| PFAM:PF04410 | UniProt:Q60EI5 | SUPFAM:SSF50447 | InterPro:Transl_B-barrel_sf | UniParc:UPI00004447B0 | RefSeq:XP_015637403.1 |
| SEG:seg | : | : | : | : | : |
Description
NAF1 domain containing protein. (Os05t0502800-01)
Coordinates
chr5:-:24739011..24742478
Molecular Weight (calculated)
73151.4 Da
IEP (calculated)
4.440
GRAVY (calculated)
-0.827
Length
681 amino acids
Sequence
(BLAST)
(BLAST)
001: MARHPRPPTP SPPRASSDTD AAFDPVVEWL LDLDQAPMAD EVAKGLGIAE EPASFDAGKV SGGSVSESRG VEEKGNALPE QSGASFDGEL DVEMEPKTGS
101: GGLVPQLVQD QHPASDIGDL AVREDGSEIM VDVERSTVPV DADMNNVSLA LVKEEAEGGG DREDKSDEEE SESSKEESSE ASSSSDEEED KRESSEASSS
201: SDEEEQMAKK TGGAGDTDSL FEEGELMLAS DDDDEEAPKG PIKSKHEVEV LPPVPKIDVQ LEPHHQTLPV GTISAIMGER VIVEGSVQHN PLNEGSILWI
301: TESRIPLGIV DELFGPVKNP YYLVRYNSAE EVPADISAGT AVSFVAEFAD HILNMKELYA KGYDGSGEND EDQTDPEFSD DEKEAEYKRS LRLAKRQTDR
401: QHEGKKTSGD KKRAQPRGSG FRKDMPPRSH DGPAPGRQSQ PHFHRPDKAP VVDAIRPLGS QDGPMSAPTK LPPGPVHPVM PAANQLTNQM GGRFMNPSQQ
501: FLPQQPNVVW PGGLTPTPHP NMGIEGAAFA ANIMQNLLIG ANQYQQQFQN HNFGGFLNQM PVPPPQFMSQ GGMPSNPMAF GGPTMAQMNP PFGPPQLPMD
601: QGNFGQAPHM AGHTVQQGPP AGFPNGQGFG QSASPQGDGE QPPMQFSSGQ FNQGNSSFHG RRQQQRGGRH SSGRGGGRHR R
101: GGLVPQLVQD QHPASDIGDL AVREDGSEIM VDVERSTVPV DADMNNVSLA LVKEEAEGGG DREDKSDEEE SESSKEESSE ASSSSDEEED KRESSEASSS
201: SDEEEQMAKK TGGAGDTDSL FEEGELMLAS DDDDEEAPKG PIKSKHEVEV LPPVPKIDVQ LEPHHQTLPV GTISAIMGER VIVEGSVQHN PLNEGSILWI
301: TESRIPLGIV DELFGPVKNP YYLVRYNSAE EVPADISAGT AVSFVAEFAD HILNMKELYA KGYDGSGEND EDQTDPEFSD DEKEAEYKRS LRLAKRQTDR
401: QHEGKKTSGD KKRAQPRGSG FRKDMPPRSH DGPAPGRQSQ PHFHRPDKAP VVDAIRPLGS QDGPMSAPTK LPPGPVHPVM PAANQLTNQM GGRFMNPSQQ
501: FLPQQPNVVW PGGLTPTPHP NMGIEGAAFA ANIMQNLLIG ANQYQQQFQN HNFGGFLNQM PVPPPQFMSQ GGMPSNPMAF GGPTMAQMNP PFGPPQLPMD
601: QGNFGQAPHM AGHTVQQGPP AGFPNGQGFG QSASPQGDGE QPPMQFSSGQ FNQGNSSFHG RRQQQRGGRH SSGRGGGRHR R
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.