Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15463 | Canola | nucleus | 35.71 | 50.62 |
| CDY51392 | Canola | nucleus | 38.95 | 44.76 |
| KRH56025 | Soybean | mitochondrion, nucleus | 15.36 | 33.7 |
| KRH25503 | Soybean | nucleus | 22.97 | 32.28 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 21.97 | 29.88 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 19.6 | 29.29 |
| Os05t0502800-01 | Rice | nucleus | 24.59 | 28.93 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 21.47 | 28.62 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 25.09 | 28.31 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 22.1 | 27.7 |
| EES19773 | Sorghum | nucleus | 24.22 | 26.54 |
| PGSC0003DMT400047290 | Potato | nucleus | 24.59 | 26.51 |
| HORVU6Hr1G056850.1 | Barley | plastid | 22.47 | 25.82 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 22.1 | 25.47 |
| Solyc07g054460.2.1 | Tomato | nucleus | 24.47 | 25.19 |
| Zm00001d038622_P001 | Maize | plastid | 23.1 | 24.63 |
| TraesCS1A01G322700.1 | Wheat | plastid | 24.84 | 22.74 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 25.84 | 22.4 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 25.47 | 22.01 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 24.59 | 21.91 |
Protein Annotations
| MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | EntrezGene:839468 | UniProt:A0A178WI11 | ProteinID:AAF86533.1 | ProteinID:AEE27583.1 |
| ArrayExpress:AT1G03530 | EnsemblPlantsGene:AT1G03530 | RefSeq:AT1G03530 | TAIR:AT1G03530 | RefSeq:AT1G03530-TAIR-G | EnsemblPlants:AT1G03530.1 |
| TAIR:AT1G03530.1 | Symbol:ATNAF1 | ncoils:Coil | GO:GO:0001522 | GO:GO:0005575 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf |
| InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 | RefSeq:NP_171852.2 | ProteinID:OAP18019.1 | PFAM:PF04410 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| UniProt:Q9LR70 | SUPFAM:SSF50447 | InterPro:Transl_B-barrel_sf | UniParc:UPI000009F7E3 | SEG:seg | : |
Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
Coordinates
chr1:-:880384..883599
Molecular Weight (calculated)
88842.9 Da
IEP (calculated)
3.996
GRAVY (calculated)
-0.909
Length
801 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.