Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G03530.1 | EER99769 | AT3G57150.1 | 17712600 |
| AT1G03530.1 | EES02707 | AT3G57150.1 | 17712600 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038622_P001 | Maize | plastid | 75.79 | 73.77 |
| Os05t0502800-01 | Rice | nucleus | 52.26 | 56.09 |
| TraesCS6B01G251300.1 | Wheat | nucleus | 41.72 | 51.78 |
| TraesCS6A01G230600.1 | Wheat | nucleus | 42.13 | 51.25 |
| TraesCS6D01G204400.1 | Wheat | mitochondrion, nucleus | 43.37 | 45.61 |
| HORVU6Hr1G056850.1 | Barley | plastid | 42.95 | 45.05 |
| HORVU1Hr1G065830.1 | Barley | extracellular, nucleus, plastid | 53.21 | 42.1 |
| TraesCS1A01G322700.1 | Wheat | plastid | 49.79 | 41.6 |
| TraesCS1B01G335000.1 | Wheat | cytosol, mitochondrion | 51.03 | 41.49 |
| TraesCS1D01G323100.1 | Wheat | cytosol | 51.16 | 40.35 |
| KRH56025 | Soybean | mitochondrion, nucleus | 16.69 | 33.42 |
| GSMUA_Achr9P12240_001 | Banana | cytosol | 28.86 | 33.02 |
| GSMUA_Achr5P00860_001 | Banana | nucleus | 23.39 | 31.9 |
| KRH25503 | Soybean | nucleus | 24.49 | 31.4 |
| CDY15463 | Canola | nucleus | 20.93 | 27.08 |
| VIT_12s0059g01970.t01 | Wine grape | nucleus | 25.17 | 25.92 |
| CDY64129 | Canola | nucleus | 25.03 | 25.85 |
| AT1G03530.1 | Thale cress | nucleus | 26.54 | 24.22 |
| PGSC0003DMT400047290 | Potato | nucleus | 24.49 | 24.09 |
| CDY51392 | Canola | nucleus | 22.71 | 23.82 |
| Solyc07g054460.2.1 | Tomato | nucleus | 24.49 | 23.01 |
Protein Annotations
| MapMan:17.1.1.2.2.1.4 | Gene3D:2.40.10.230 | EntrezGene:8067476 | UniProt:C5Z0Q7 | EnsemblPlants:EES19773 | ProteinID:EES19773 |
| ProteinID:EES19773.1 | GO:GO:0001522 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0042254 | InterPro:Gar1/Naf1_Cbf5-bd_sf | InterPro:H/ACA_rnp_Gar1/Naf1 | InterPro:IPR038664 | PFAM:PF04410 | EnsemblPlantsGene:SORBI_3009G189100 |
| SUPFAM:SSF50447 | unigene:Sbi.6315 | InterPro:Transl_B-barrel_sf | UniParc:UPI0001A88FEF | RefSeq:XP_002441343.1 | SEG:seg |
Description
hypothetical protein
Coordinates
chr9:-:54110850..54115003
Molecular Weight (calculated)
78352.7 Da
IEP (calculated)
4.366
GRAVY (calculated)
-0.762
Length
731 amino acids
Sequence
(BLAST)
(BLAST)
001: MARHPKPPAP PSPPPPPCPP SDSDPGVGFD PIEEWLVDFD PAMSGELAAK GLGAAEQAAA VPHTLVETAA GKSFELEFGV MDEKVEVVSS SGLDELLAPD
101: QLLVSGIGDL AVREDIPEGA VAMEMAAAPP APADAEMNTT VCVEVESEGG KEGQEAPPAP AGAEMMNTTV SVEVQPEGGK ERQESSDEES ESESSEDDDD
201: GSSSEASLSS EEEKEHGVNK DEESSEASSS EEEELEVKRH GGKAGNLESL LEEGELMIGS DAEEQKGGIK SKYEAEVLPP VPKIEIQLEP HHQTLPVGTI
301: SAIMGERVIV EGSVQHNPLN EGSILWITES RTPLGIVDEL FGPVKNPYYL VRYNSEEEVP AGISAGTNVS FVADFADHIL NMKELYAKGY DESDPVGNEE
401: EEDLPDFSDD EKEAEYKRSL RQAKRRTDRQ HEPMKTSGDR KRSQSRGSGI RKPMPPRNLD TSAPGHQPRP HFRRSDMARA GAENTAHSLG PQNAPMIAPT
501: MLPAGTMNPA MPSPVPLANQ MGGCFMNPAQ QQFLPQQPNM VWPGGFPQPP HPNMGVDGAA LAANIMQNLI AGANQFQQQF QNPNFSGAGA NQFPPQFQNQ
601: NFSGPGANQF QQQFQNPNFG GFPNQTPMPF PQFMPQTGTP ANPMPFGGRP PVNSPFGPVP MGQGNFGQPP NSQGFTNLAA PPRGDGEQDS PPQFSSRQFH
701: QGSPSFGRGR TQQRGGRHSS GRGGRGGRHR R
101: QLLVSGIGDL AVREDIPEGA VAMEMAAAPP APADAEMNTT VCVEVESEGG KEGQEAPPAP AGAEMMNTTV SVEVQPEGGK ERQESSDEES ESESSEDDDD
201: GSSSEASLSS EEEKEHGVNK DEESSEASSS EEEELEVKRH GGKAGNLESL LEEGELMIGS DAEEQKGGIK SKYEAEVLPP VPKIEIQLEP HHQTLPVGTI
301: SAIMGERVIV EGSVQHNPLN EGSILWITES RTPLGIVDEL FGPVKNPYYL VRYNSEEEVP AGISAGTNVS FVADFADHIL NMKELYAKGY DESDPVGNEE
401: EEDLPDFSDD EKEAEYKRSL RQAKRRTDRQ HEPMKTSGDR KRSQSRGSGI RKPMPPRNLD TSAPGHQPRP HFRRSDMARA GAENTAHSLG PQNAPMIAPT
501: MLPAGTMNPA MPSPVPLANQ MGGCFMNPAQ QQFLPQQPNM VWPGGFPQPP HPNMGVDGAA LAANIMQNLI AGANQFQQQF QNPNFSGAGA NQFPPQFQNQ
601: NFSGPGANQF QQQFQNPNFG GFPNQTPMPF PQFMPQTGTP ANPMPFGGRP PVNSPFGPVP MGQGNFGQPP NSQGFTNLAA PPRGDGEQDS PPQFSSRQFH
701: QGSPSFGRGR TQQRGGRHSS GRGGRGGRHR R
001: MVGFPANQAK TVEEELPLQV VADQDPKVKT FKDSFDFPSI DSFPDFDSIT WSESNRNVED FSIEDTDFDF FEYHMEIPQE DVVTVSDVMC PENQTTVNSE
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
101: SIEGKLEVFN DDMSGEVGVS SVRSESMVEV KPVLCDVMSE EVGVSSVEVE PNVCVEMSAN GGDEPAVKDS EPVVSENSRS MEGETEPVVV SDASVACPTM
201: DLDESGLKKT DEGLACSIEV GLEKVSLAVD DDEKSDEAKG EMDSAESESE TSSSSASSSD SSSSEEEESD EDESDKEENK KEEKFEHMVV GKEDDLAGEL
301: EEGEIENLDE ENGDDDIEDE DDDDDDDDDD DDDVNEMVAW SNDEDDDLGL QTKEPIRSKN ELKELPPVPP VDVTLEPHHA TLPVGVVLSV MSAQVIVEGM
401: EKHSPLTEGS ILWITEKRTP LGLVDEIFGP VKCPYYIVRF NSESEVPEGV CQGTPVSFVA DFAQHILNIK ELQKKGYDAS GDNDEEIPDE LEFSDDEKEA
501: EYRRMQKLEK RGMMSDQKTG NTRNKKKKNR DPGRPTSSYS GEWTKNQGSS SLSSNRSDPQ MGGPRPQMDG FPPNNAAWRP QSNQQNPYQL PPIPNQMGMQ
601: IPFMAMQNQN QMMFQPQFNG GQMPMPGGPG GLNFFPGQAS APWPAMVGQN CFNQQFGMGR GIQQQPLPNE LSFNMFSQGL QMHPPQSQMH RPQSQMNPQF
701: QMPPQFQPHQ QSPMNPQYQM MHRPQSPANP QFQMQAQSDV RPLQSQIPQS PSDLQSPMEP QSQGFSSGQS SERGRGFHGR GRGRGRGRFG RGRGRGRQQS
801: G
Arabidopsis Description
ATNAF1NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.