Factsheet for TraesCS2B01G177000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G322700.1
TraesCS1B01G335000.1
TraesCS1D01G323100.1
TraesCS6A01G230600.1
TraesCS6B01G251300.1
TraesCS6D01G204400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57150.1	TraesCS1A01G322700.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1B01G335000.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS1D01G323100.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6A01G230600.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6B01G251300.1	AT1G03530.1	17712600
AT3G57150.1	TraesCS6D01G204400.1	AT1G03530.1	17712600

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G157000.1	Wheat	nucleus	90.61	98.92
TraesCS2A01G151800.1	Wheat	cytosol	98.68	98.52
TraesCS2A01G151900.1	Wheat	cytosol, nucleus, plastid	97.69	98.02
TraesCS2D01G156900.1	Wheat	cytosol	84.35	96.6
EER99769	Sorghum	cytosol, nucleus, plastid	80.72	83.62
Os07t0636000-01	Rice	nucleus	82.37	83.33
Zm00001d022265_P001	Maize	cytosol, nucleus, plastid	79.41	82.68
Os04t0576300-01	Rice	nucleus, plastid	26.19	79.9
Os03t0370500-02	Rice	nucleus	77.43	79.53
Os11t0598700-00	Rice	mitochondrion	25.86	77.72
CDY25279	Canola	cytosol	63.26	73.0
CDY50671	Canola	cytosol	62.93	72.62
Bra003270.1-P	Field mustard	cytosol	65.24	72.39
CDY33839	Canola	cytosol	61.94	72.17
CDX67680	Canola	cytosol	64.91	72.03
HORVU2Hr1G027370.1	Barley	cytosol	74.79	70.72
VIT_08s0007g00190.t01	Wine grape	cytosol	67.71	70.14
AT3G57150.1	Thale cress	cytosol	65.07	69.91
GSMUA_Achr11P...	Banana	cytosol	58.32	69.82
Bra033149.1-P	Field mustard	cytosol	62.77	69.65
PGSC0003DMT400018869	Potato	cytosol	65.73	69.63
KRH43875	Soybean	nucleus	64.58	67.59
KRH10580	Soybean	nucleus	65.57	67.57
Solyc02g081810.2.1	Tomato	nucleus	65.57	66.67
HORVU2Hr1G027400.5	Barley	plastid	74.14	65.89
GSMUA_Achr11P...	Banana	nucleus	67.71	64.52
GSMUA_Achr8P15080_001	Banana	nucleus	58.32	40.6
TraesCS1B01G031100.1	Wheat	mitochondrion	6.92	8.27

Protein Annotations

MapMan:17.1.1.2.2.1.1	Gene3D:2.30.130.70	Gene3D:3.30.2350.10	ncoils:Coil	InterPro:Dyskerin-like	GO:GO:0001522
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009506
GO:GO:0009982	GO:GO:0009987	InterPro:IPR002478	PFAM:PF01472	PFAM:PF01509	PFAM:PF08068
PFAM:PF16198	PFscan:PS50890	InterPro:PUA	InterPro:PUA-like_sf	InterPro:PsdUridine_synth_N	InterPro:PsdUridine_synth_cat_dom_sf
SMART:SM00359	SMART:SM01136	SUPFAM:SSF55120	SUPFAM:SSF88697	TIGRFAMs:TIGR00425	TIGRFAMs:TIGR00451
EnsemblPlantsGene:TraesCS2B01G177000	EnsemblPlants:TraesCS2B01G177000.1	InterPro:TruB_C	InterPro:Uncharacterised_CHP00451	TIGR:cd02572	SEG:seg
InterPro:tRNA_PsdUridine_synth_B_fam	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:152156927..152158750

Molecular Weight (calculated)

66702.4 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.603

Length

607 amino acids

Sequence
(BLAST)

001: MSSTPPAVAS PASEHTKSKK KKSKSKDASA DPAAAAADTT SLADAEAKTD GYMIKPQALV PSLDTSTWPL LLKNYDRLNV RTGHYTPLPS GHSPLKRPLA
101: EYLRYGVINL DKPSNPSSHE VVAWIKRLLR VEKTGHSGTL DPKVTGNLIV CVDRATRLVK SQQGAGKEYV CIARFHAAVP DTARVARALE SLTGAVFQRP
201: PLISAVKRQL RVRTIYESKL LEHDAERHLA VFWISCEAGT YVRTLCVHLG LLLGVGAHMQ ELRRVRSGIL GEQDNMVTMH DVMDAMWALD NHKDESYIRR
301: VVMPLEVILT SYKRLVVKDS AVNAICYGAK LMIPGLLRFE NDIDVGEEVV LMTTKGEAIA IGIAEMPTAV MATCDHGAVA KIKRVVMDRD TYPRKWGLGP
401: VALKKKKMIA EGLLDKHGKP TEKTPAEWLR NVVLPTGGDA MIASLAAAPE PEKVKVEQQD VVPSEEVKEK KKRKSDEDDV TASTPAKKMK VEEVTEAVEG
501: EKSEKKKKKK KEKGEPGSAV SEAVKEEKNS LSDEEKGTSE KKKKKKSKEG GDDVAPESAE VEKSEKKKDK KKSKEGGDDV ATESEVEKSE KKKEKKKKKK
601: DAEEAAQ

Best Arabidopsis Sequence Match ( AT3G57150.1 )
(BLAST)

001: MAEVDISHSK KKKQDKTEND AADTGDYMIK PQSFTPAIDT SQWPILLKNY DRLNVRTGHY TPISAGHSPL KRPLQEYIRY GVINLDKPAN PSSHEVVAWI
101: KRILRVEKTG HSGTLDPKVT GNLIVCIDRA TRLVKSQQGA GKEYVCVARL HSAVPDVAKV ARALESLTGA VFQRPPLISA VKRQLRIRTI YESKLLEYDA
201: DRHLVVFWVS CEAGTYIRTM CVHLGLLLGV GGHMQELRRV RSGILGENNN MVTMHDVMDA QFVYDNSRDE SYLRRVIMPL EMILTSYKRL VVKDSAVNAI
301: CYGAKLMIPG LLRFENDIDV GTEVVLMTTK GEAIAVGIAE MTTSVMATCD HGVVAKIKRV VMDRDTYPRK WGLGPRASMK KKLIADGKLD KHGKPNEKTP
401: VEWSRNVVLP TGGDAIIAGA AAAPEEIKAD AENGEAGEAR KRKHDDSSDS PAPVTTKKSK TKEVEGEEAE EKVKSSKKKK KKDKEEEKEE EAGSEKKEKK
501: KKKDKKEEVI EEVASPKSEK KKKKKSKDTE AAVDAEDESA AEKSEKKKKK KDKKKKNKDS EDDEE

Arabidopsis Description

CBF5Uncharacterized protein At3g57150 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SVF3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.