Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G148100.1 | Wheat | nucleus | 84.25 | 84.77 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 86.61 | 84.53 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 75.46 | 74.47 |
| Os03t0596900-01 | Rice | nucleus | 38.96 | 54.2 |
| EER91265 | Sorghum | nucleus | 33.13 | 50.23 |
| Zm00001d013757_P010 | Maize | nucleus | 32.62 | 48.85 |
| Zm00001d033159_P001 | Maize | nucleus | 21.88 | 47.87 |
| GSMUA_Achr9P09240_001 | Banana | nucleus | 11.86 | 38.28 |
| GSMUA_Achr6P35030_001 | Banana | nucleus | 20.25 | 37.43 |
| GSMUA_Achr4P23560_001 | Banana | nucleus | 19.73 | 36.01 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 11.04 | 31.03 |
| Solyc10g006000.2.1 | Tomato | nucleus | 16.77 | 29.6 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 17.69 | 28.88 |
| TraesCS3A01G436900.1 | Wheat | nucleus | 13.29 | 27.84 |
| KRG98507 | Soybean | nucleus | 20.65 | 27.48 |
| KRH46360 | Soybean | nucleus | 20.55 | 27.16 |
| CDY06563 | Canola | nucleus | 18.71 | 26.64 |
| CDX94304 | Canola | nucleus | 11.86 | 26.54 |
| Solyc07g065490.2.1 | Tomato | nucleus | 16.77 | 25.87 |
| Bra027748.1-P | Field mustard | nucleus | 4.6 | 25.57 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 16.97 | 24.3 |
| KRH46364 | Soybean | nucleus | 20.04 | 24.29 |
| CDY20754 | Canola | nucleus | 19.53 | 24.06 |
| CDY28645 | Canola | nucleus | 19.43 | 23.96 |
| AT4G26630.1 | Thale cress | nucleus | 18.61 | 23.85 |
| KRG98502 | Soybean | nucleus | 17.69 | 23.7 |
| Bra035582.1-P | Field mustard | nucleus | 19.12 | 23.55 |
| AT5G55660.1 | Thale cress | nucleus | 18.61 | 23.39 |
| CDX89318 | Canola | nucleus | 16.36 | 22.73 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 19.73 | 22.31 |
| CDY17352 | Canola | extracellular, vacuole | 18.51 | 21.86 |
| Bra026415.1-P | Field mustard | nucleus | 18.4 | 21.56 |
| CDX97358 | Canola | nucleus | 19.73 | 15.91 |
| Bra010432.1-P | Field mustard | nucleus | 17.28 | 14.94 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G137900.1 | EnsemblPlantsGene:TraesCS4A01G137900 | Gene3D:1.10.10.60 | InterPro:DEK_C | ncoils:Coil | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | PFAM:PF08766 | SEG:seg | SUPFAM:SSF109715 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr4A:-:200088470..200098938
Molecular Weight (calculated)
107204.0 Da
IEP (calculated)
4.751
GRAVY (calculated)
-1.180
Length
978 amino acids
Sequence
(BLAST)
(BLAST)
001: MTGADLAPVM ELKAVANGGT STEVVASDKK DNTKMEEAGE SKDVAAANTN ANQHNKASEN GAKGSSDDDA KMEEAEDAKE DDVGAVKQAG TEGVKSGDNA
101: DAKEGNGANA AEHEDSKTAA IEDVVAKEDD NTKSAKHKDS KMVIVEDADA KEDDKAAKAA EHEDSKTVGI EDVVAMEDDN TKSVEYKDSK MVIVEDANAN
201: EDDKAKAAEH EDSKAAGIEY TVAKEDAVSA EHKDSKMVIV EDADAKEDDK AKAAEHDDHR TGGVAAEHKD HRTGGVEDAD ANEDIGAKAE EFKDGNMNTV
301: DNADAKEDEY ANASEHEDAK MVDVDDADAK EDYGTKVAEH EDVKMGAVED TDAKEDNNTK EAEHQDIIMG AVKHADLKED NSSNVAERVD VKMAEAETNP
401: GDAELEDKGH KEEMDVNTEV KKGPRDAEKC GSEMHDELNG QGKNGAARQQ ENTAEEMSDD DSQGEEEVEE KGSSDKKEEG GDGKANENEE KLEKESANKE
501: GKDGKVTEEE ASEADKNVEE NKEETPKNKR ARSSRDRRQG QDKKQHGSKS REAKSLLYTP SPYGIDRPQR ERKIVERLVE VIDKEPNRSF VVEKGRGTPL
601: KDIPSVAQRL TRKKPADLKF LHNVLFGRKG KWLMFSMFQT VDFKGHILQF SGFVWHESDE KQRAKAKEKL DKCMKDMLVD LCWLLAIPVP KTNIRKEDIV
701: AKLLDFIAEP RLMPDSGLSD DQGSNSRKRK RGGGSSSKTL DITPKRSKKK FADDISPRRK QALEYDTDED VKSDSEEDAD ESHDEQEDGY DSAEDKANRK
801: SSEVKYSAGK KKAAAGSTHR TSPPRTASKT AGKTSPSKGS KEKESPDESA KVFSRKKKPI ISKHTPSSGK VIEENKSSGK EAMKSKGESA EGGLPSKAEL
901: KKTIIGILKK VDFNTSTFSD ILKKLDDHYK IDLTARKGAI KIMIQEELTK LSEQEDDDQD KNVDAKMKQS RHRAKVAV
101: DAKEGNGANA AEHEDSKTAA IEDVVAKEDD NTKSAKHKDS KMVIVEDADA KEDDKAAKAA EHEDSKTVGI EDVVAMEDDN TKSVEYKDSK MVIVEDANAN
201: EDDKAKAAEH EDSKAAGIEY TVAKEDAVSA EHKDSKMVIV EDADAKEDDK AKAAEHDDHR TGGVAAEHKD HRTGGVEDAD ANEDIGAKAE EFKDGNMNTV
301: DNADAKEDEY ANASEHEDAK MVDVDDADAK EDYGTKVAEH EDVKMGAVED TDAKEDNNTK EAEHQDIIMG AVKHADLKED NSSNVAERVD VKMAEAETNP
401: GDAELEDKGH KEEMDVNTEV KKGPRDAEKC GSEMHDELNG QGKNGAARQQ ENTAEEMSDD DSQGEEEVEE KGSSDKKEEG GDGKANENEE KLEKESANKE
501: GKDGKVTEEE ASEADKNVEE NKEETPKNKR ARSSRDRRQG QDKKQHGSKS REAKSLLYTP SPYGIDRPQR ERKIVERLVE VIDKEPNRSF VVEKGRGTPL
601: KDIPSVAQRL TRKKPADLKF LHNVLFGRKG KWLMFSMFQT VDFKGHILQF SGFVWHESDE KQRAKAKEKL DKCMKDMLVD LCWLLAIPVP KTNIRKEDIV
701: AKLLDFIAEP RLMPDSGLSD DQGSNSRKRK RGGGSSSKTL DITPKRSKKK FADDISPRRK QALEYDTDED VKSDSEEDAD ESHDEQEDGY DSAEDKANRK
801: SSEVKYSAGK KKAAAGSTHR TSPPRTASKT AGKTSPSKGS KEKESPDESA KVFSRKKKPI ISKHTPSSGK VIEENKSSGK EAMKSKGESA EGGLPSKAEL
901: KKTIIGILKK VDFNTSTFSD ILKKLDDHYK IDLTARKGAI KIMIQEELTK LSEQEDDDQD KNVDAKMKQS RHRAKVAV
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.