Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G071590.1 | Barley | nucleus | 67.31 | 63.09 |
| TraesCS1A01G288400.1 | Wheat | nucleus | 61.96 | 61.8 |
| TraesCS1D01G287400.1 | Wheat | nucleus | 59.95 | 59.6 |
| Os05t0463500-01 | Rice | nucleus | 18.9 | 49.24 |
| TraesCS1B01G297600.1 | Wheat | nucleus | 24.33 | 39.27 |
| Zm00001d038396_P003 | Maize | nucleus | 38.13 | 33.78 |
| OQU78150 | Sorghum | nucleus | 38.88 | 33.57 |
| Bra028857.1-P | Field mustard | nucleus | 10.79 | 28.04 |
| CDY04873 | Canola | nucleus | 10.79 | 28.04 |
| CDY55692 | Canola | nucleus | 10.45 | 27.59 |
| KRH32403 | Soybean | nucleus | 15.38 | 27.42 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 18.56 | 26.4 |
| KRH19811 | Soybean | nucleus | 16.05 | 24.68 |
| Zm00001d010556_P002 | Maize | nucleus | 37.96 | 24.46 |
| Solyc04g049950.1.1 | Tomato | nucleus | 8.86 | 23.4 |
| CDY07935 | Canola | nucleus | 11.04 | 23.36 |
| AT5G02950.2 | Thale cress | nucleus | 12.12 | 22.94 |
| KRH33337 | Soybean | nucleus | 18.98 | 22.28 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 16.39 | 22.07 |
| PGSC0003DMT400087303 | Potato | nucleus | 14.05 | 21.79 |
| KRH70385 | Soybean | nucleus | 18.48 | 21.77 |
| CDX73990 | Canola | nucleus | 10.2 | 21.07 |
| KRH34572 | Soybean | nucleus | 14.05 | 20.64 |
| TraesCS1B01G077800.1 | Wheat | cytosol | 9.45 | 20.51 |
| TraesCS1B01G077900.1 | Wheat | nucleus | 8.61 | 18.49 |
| AT3G09670.1 | Thale cress | nucleus | 10.7 | 17.63 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 21.32 | 16.12 |
| Bra001301.1-P | Field mustard | nucleus | 4.26 | 15.09 |
| PGSC0003DMT400027409 | Potato | nucleus | 16.72 | 12.08 |
| KRG92228 | Soybean | nucleus | 16.05 | 11.0 |
| TraesCS3B01G603600.1 | Wheat | nucleus | 13.46 | 10.61 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 16.56 | 10.55 |
| TraesCS1B01G116700.1 | Wheat | plastid | 9.45 | 10.47 |
| Solyc09g007340.2.1 | Tomato | cytosol | 16.56 | 9.34 |
| TraesCS3B01G603700.1 | Wheat | nucleus | 1.34 | 8.29 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G297800.1 | EnsemblPlantsGene:TraesCS1B01G297800 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF4 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| TIGR:cd05162 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:518176548..518180326
Molecular Weight (calculated)
127393.0 Da
IEP (calculated)
4.436
GRAVY (calculated)
-0.525
Length
1196 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSSPAAVES PDPGADRGLK QGSDAAGPAG DSDVTMAEAS EEVAAAAEVK DEGAALARDA ALTAGAVRDA PDAVLEEADA ASAAAVDPLY ATEAAGMIIA
0101: EGCTDGDSIN GLGLGSVSSD SKAGALTGEP EWELVTAGDV AGASATSEQA EAESSELGEY HVNATPVAGH ERQDNGVAHF EEEIQNGLAI SAQCARYCLP
0201: PLDKEGFQVS DLVWGKVKGH PWWPGEIFDP SNASELALKH QKKDSHLVAY FGDNTFAWCD ESQLKPFVTD YSQMEKQSSL DSFVGSVNYA LEELSRRILS
0301: GMSCACLPEE LSDSGMSYMV ENAGLKDGVT CSTVNRSEIL ASFSPESLLR YVRSLALFPG QGGDLLELVI ACSQLTSFYR SKGCPELASF QTGSAWVEDD
0401: TDTSPIEDVV VEEVVVIEVP PPEVKPKRGR GRPRKHKPED KLELPGKQKP AVAAERQMIK DFDDKKRSLD SFEDLDAKSP TGGSFKIGEC IRRAASQLTG
0501: PSSTVKSQNE NTAEAENAEF DVSSDDAANE LTVEKCAKRR RLHSHHLADP KELFSQLCSV AIEPTDGYNF SALTISYFSD FRNYVVSVAT EASIIEKSTS
0601: KKRRKKRVLP SPELETTDHM QDSYWSGLSL LNHPIHSLKR ASTNTRPRRR RKSSHETDLS SVQEQQVAPK KEIQVAPKKQ IQVAPKKQIQ VIERSIIHVD
0701: EKIVDEWKPT ALVLSFGRST DLLSETDLIK KFGRYGPLKE SETEVQKSTN TIKIVFKKRA DAEKAFSAAG KYGTVGPSLR SFRLMNMPFS LGESEPNKSE
0801: ACPGDHGPKL PGPSEPKASL DAVKDNQVDK TEKAEAVQPS SGEQVETVKK TCQAEPVKQS SGAQADAVKK AGKIAAELTG PSDPIATADV AEQTMENQAP
0901: KDAVEIPCDV KLEDEALTEE SVDQVVTEQV KVPSDAVPDT SKVQPETPVE HVGTEAEADT AQDLTEVSVQ EAGLKKQILE PKTAEIEPEQ VSCPKQTVQV
1001: EDVIDASGGH TNVDRKTAEE ITMTEVVFEG AVESEAVAPV EETVEDKATA GTLGEAPGDE MENTDAAESL GGEVGVGEAT GDSPDERVAV EALAGMSTQG
1101: ETAAEAADAE IATTGKTAEG VGVKTRGKKA TAAKKPVESA TAEAPGKKAT KAKKPVEDAT VEARDEKAAT AKKSAEGATV EAPDEKAMTA KEDDMA
0101: EGCTDGDSIN GLGLGSVSSD SKAGALTGEP EWELVTAGDV AGASATSEQA EAESSELGEY HVNATPVAGH ERQDNGVAHF EEEIQNGLAI SAQCARYCLP
0201: PLDKEGFQVS DLVWGKVKGH PWWPGEIFDP SNASELALKH QKKDSHLVAY FGDNTFAWCD ESQLKPFVTD YSQMEKQSSL DSFVGSVNYA LEELSRRILS
0301: GMSCACLPEE LSDSGMSYMV ENAGLKDGVT CSTVNRSEIL ASFSPESLLR YVRSLALFPG QGGDLLELVI ACSQLTSFYR SKGCPELASF QTGSAWVEDD
0401: TDTSPIEDVV VEEVVVIEVP PPEVKPKRGR GRPRKHKPED KLELPGKQKP AVAAERQMIK DFDDKKRSLD SFEDLDAKSP TGGSFKIGEC IRRAASQLTG
0501: PSSTVKSQNE NTAEAENAEF DVSSDDAANE LTVEKCAKRR RLHSHHLADP KELFSQLCSV AIEPTDGYNF SALTISYFSD FRNYVVSVAT EASIIEKSTS
0601: KKRRKKRVLP SPELETTDHM QDSYWSGLSL LNHPIHSLKR ASTNTRPRRR RKSSHETDLS SVQEQQVAPK KEIQVAPKKQ IQVAPKKQIQ VIERSIIHVD
0701: EKIVDEWKPT ALVLSFGRST DLLSETDLIK KFGRYGPLKE SETEVQKSTN TIKIVFKKRA DAEKAFSAAG KYGTVGPSLR SFRLMNMPFS LGESEPNKSE
0801: ACPGDHGPKL PGPSEPKASL DAVKDNQVDK TEKAEAVQPS SGEQVETVKK TCQAEPVKQS SGAQADAVKK AGKIAAELTG PSDPIATADV AEQTMENQAP
0901: KDAVEIPCDV KLEDEALTEE SVDQVVTEQV KVPSDAVPDT SKVQPETPVE HVGTEAEADT AQDLTEVSVQ EAGLKKQILE PKTAEIEPEQ VSCPKQTVQV
1001: EDVIDASGGH TNVDRKTAEE ITMTEVVFEG AVESEAVAPV EETVEDKATA GTLGEAPGDE MENTDAAESL GGEVGVGEAT GDSPDERVAV EALAGMSTQG
1101: ETAAEAADAE IATTGKTAEG VGVKTRGKKA TAAKKPVESA TAEAPGKKAT KAKKPVEDAT VEARDEKAAT AKKSAEGATV EAPDEKAMTA KEDDMA
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.