Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G287400.1 | Wheat | nucleus | 64.3 | 64.09 |
| TraesCS1B01G297800.1 | Wheat | nucleus | 61.8 | 61.96 |
| HORVU1Hr1G071590.1 | Barley | nucleus | 56.3 | 52.9 |
| Os05t0463500-01 | Rice | nucleus | 18.52 | 48.37 |
| Zm00001d038396_P003 | Maize | nucleus | 39.45 | 35.04 |
| OQU78150 | Sorghum | nucleus | 39.78 | 34.44 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 20.6 | 32.46 |
| CDY04873 | Canola | nucleus | 10.18 | 26.52 |
| Bra028857.1-P | Field mustard | nucleus | 10.18 | 26.52 |
| CDY55692 | Canola | nucleus | 9.76 | 25.83 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 18.1 | 25.8 |
| KRH32403 | Soybean | nucleus | 14.01 | 25.04 |
| Zm00001d010556_P002 | Maize | nucleus | 37.45 | 24.19 |
| Solyc04g049950.1.1 | Tomato | nucleus | 8.51 | 22.52 |
| KRH19811 | Soybean | nucleus | 14.6 | 22.49 |
| AT5G02950.2 | Thale cress | nucleus | 11.51 | 21.84 |
| CDY07935 | Canola | nucleus | 10.26 | 21.77 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 15.93 | 21.51 |
| PGSC0003DMT400087303 | Potato | nucleus | 13.76 | 21.4 |
| CDX73990 | Canola | nucleus | 10.18 | 21.07 |
| KRH70385 | Soybean | nucleus | 17.6 | 20.79 |
| TraesCS1A01G059600.1 | Wheat | cytosol | 9.34 | 20.48 |
| KRH33337 | Soybean | nucleus | 17.1 | 20.12 |
| KRH34572 | Soybean | nucleus | 13.51 | 19.9 |
| TraesCS1A01G059700.1 | Wheat | cytosol | 5.92 | 19.09 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 21.6 | 16.37 |
| AT3G09670.1 | Thale cress | nucleus | 9.84 | 16.25 |
| Bra001301.1-P | Field mustard | nucleus | 4.17 | 14.79 |
| PGSC0003DMT400027409 | Potato | nucleus | 15.76 | 11.41 |
| TraesCS1A01G089100.1 | Wheat | plastid | 10.09 | 11.15 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 16.43 | 10.5 |
| KRG92228 | Soybean | nucleus | 15.26 | 10.49 |
| Solyc09g007340.2.1 | Tomato | cytosol | 16.35 | 9.25 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 5.84 | 4.48 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G288400.1 | EnsemblPlantsGene:TraesCS1A01G288400 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR42851 |
| PANTHER:PTHR42851:SF4 | PFAM:PF00855 | PFscan:PS50812 | SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 |
| TIGR:cd05162 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:485353384..485357481
Molecular Weight (calculated)
127799.0 Da
IEP (calculated)
4.440
GRAVY (calculated)
-0.543
Length
1199 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSSPAAVAS PDPGADAGPK QDSGAVGPAG DSDVTMAEAS EEVAAAAEVK DEGAALARDA IRGAPDAGRE EADAAAAVDP LYATEAAGMV VTEGCVDGDS
0101: INGLGLGSGS SDSKAGALTG EPEWELVTAE DVAGASATSE QAEAESGELG EYHVNATPVA GNEGQDNGVA HFEEEIQNGL AISAQCARYS IPPLDKEGFR
0201: VSDLVWGKVK GHPWWPGEIF DPSNASELAL KHQRKDSHLV AYFGDNTFAW CDESQLKPFV TDYSQMEKQS SLDSFVGSVN YALEELSRRI LSGMSCACLP
0301: EELSDSGMSY MVENAGLKDG VTCSTVNRSE ILASFSPESL LRYIRSLALF PGQGGDLLEL VIACSQLTSF YRSKGCPELA SFQTGSAWVE DDTDISPIED
0401: VVVEEVVVSE VPPPEVKPKR GRGRPRKHKP EDKLELPGKQ KPAVAAERQM IKDFDDKKRS LDSFEDLDAK SPTGGSFKIG ECIRRAASQL TGPSPIAKSQ
0501: NENTAEAENA EFDVSSDDAA NELTVEKCAK RRRLHSHHLA DPKELFSQLC SVAIEPTDGY NFSALTISYF SDFRNYVVSV ATEASIIEKS TSKRRRKKRV
0601: LPSPELETID HMQDSYWSGL SLLNHPIHSL KRASTNTRPR RRRKSSHETD LSSVQDQQMA PKKEIQVAPK KQIQVAPKKQ IQVIERSIIH VDEKIVDEWK
0701: PTALVLSFGR STDLLSGNDL IKKFGRYGPL KESESEVQKS TNTIKIVFKK RADAEKAFNA AGKYGTVGPS LRSFRLVNMP FSLGESEPNK SEACPGDHGP
0801: KLPGPSEPKV SLDAVKDNQV DKTEKAEAVQ PSSGEQVETV KKACQAEPVK QSSGAQVETV QQACQPEADA VKKAGKIAAE LTGPSDQIAT ADVTEQTMEN
0901: QAPKDAVKIP CDVKLEDEAL TEESVDQVVT EQVKVPSDAV PDTSKVQPET PVEHVGTAAE GDTAQDLTEV SVQEAGLKKQ IVEPKTAEIE PEQVSCPEQT
1001: VQVEDVIDAS GGHTNVDRKT AEEITMTEVV FEGAVESEAV APVEETVEDK ATAGTLGKAP GDEMENRDAA ESPGGEVGVG EATGDSPDER VAVEALAGMS
1101: TQGETTAEAA DAEITTTGKT AEGVGVKTRS KKATTAKKPV ESATAEAPGK KATTAKKPVE DAMVEARDEK AATAKKNAEG ATVEAPDEKA MTAEEDAMA
0101: INGLGLGSGS SDSKAGALTG EPEWELVTAE DVAGASATSE QAEAESGELG EYHVNATPVA GNEGQDNGVA HFEEEIQNGL AISAQCARYS IPPLDKEGFR
0201: VSDLVWGKVK GHPWWPGEIF DPSNASELAL KHQRKDSHLV AYFGDNTFAW CDESQLKPFV TDYSQMEKQS SLDSFVGSVN YALEELSRRI LSGMSCACLP
0301: EELSDSGMSY MVENAGLKDG VTCSTVNRSE ILASFSPESL LRYIRSLALF PGQGGDLLEL VIACSQLTSF YRSKGCPELA SFQTGSAWVE DDTDISPIED
0401: VVVEEVVVSE VPPPEVKPKR GRGRPRKHKP EDKLELPGKQ KPAVAAERQM IKDFDDKKRS LDSFEDLDAK SPTGGSFKIG ECIRRAASQL TGPSPIAKSQ
0501: NENTAEAENA EFDVSSDDAA NELTVEKCAK RRRLHSHHLA DPKELFSQLC SVAIEPTDGY NFSALTISYF SDFRNYVVSV ATEASIIEKS TSKRRRKKRV
0601: LPSPELETID HMQDSYWSGL SLLNHPIHSL KRASTNTRPR RRRKSSHETD LSSVQDQQMA PKKEIQVAPK KQIQVAPKKQ IQVIERSIIH VDEKIVDEWK
0701: PTALVLSFGR STDLLSGNDL IKKFGRYGPL KESESEVQKS TNTIKIVFKK RADAEKAFNA AGKYGTVGPS LRSFRLVNMP FSLGESEPNK SEACPGDHGP
0801: KLPGPSEPKV SLDAVKDNQV DKTEKAEAVQ PSSGEQVETV KKACQAEPVK QSSGAQVETV QQACQPEADA VKKAGKIAAE LTGPSDQIAT ADVTEQTMEN
0901: QAPKDAVKIP CDVKLEDEAL TEESVDQVVT EQVKVPSDAV PDTSKVQPET PVEHVGTAAE GDTAQDLTEV SVQEAGLKKQ IVEPKTAEIE PEQVSCPEQT
1001: VQVEDVIDAS GGHTNVDRKT AEEITMTEVV FEGAVESEAV APVEETVEDK ATAGTLGKAP GDEMENRDAA ESPGGEVGVG EATGDSPDER VAVEALAGMS
1101: TQGETTAEAA DAEITTTGKT AEGVGVKTRS KKATTAKKPV ESATAEAPGK KATTAKKPVE DAMVEARDEK AATAKKNAEG ATVEAPDEKA MTAEEDAMA
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.