Factsheet for PGSC0003DMT400087303

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55692	Canola	nucleus	20.75	35.32
Bra028857.1-P	Field mustard	nucleus	20.36	34.13
CDY04873	Canola	nucleus	20.36	34.13
KRH32403	Soybean	nucleus	26.59	30.55
AT5G02950.2	Thale cress	nucleus	23.74	28.96
Solyc09g007340.2.1	Tomato	cytosol	76.78	27.94
KRH19811	Soybean	nucleus	27.37	27.12
HORVU3Hr1G117740.2	Barley	nucleus	6.74	27.08
VIT_08s0040g02440.t01	Wine grape	nucleus	29.7	25.79
CDX73990	Canola	nucleus	17.25	22.97
TraesCS1D01G060800.1	Wheat	cytosol	16.21	22.89
TraesCS1A01G059700.1	Wheat	cytosol	10.89	22.58
Os05t0122500-00	Rice	nucleus	15.3	22.39
TraesCS1B01G077800.1	Wheat	cytosol	15.95	22.32
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	15.82	22.14
CDY07935	Canola	nucleus	16.21	22.12
TraesCS1D01G060900.1	Wheat	nucleus	15.56	22.06
TraesCS1A01G059600.1	Wheat	cytosol	15.43	21.75
EES18937	Sorghum	nucleus, plastid	14.27	21.74
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	10.51	21.37
Os05t0463500-01	Rice	nucleus	12.71	21.35
Zm00001d010984_P001	Maize	plastid	13.88	20.94
GSMUA_Achr9P04320_001	Banana	nucleus	20.49	20.68
GSMUA_Achr10P...	Banana	nucleus	18.81	20.45
TraesCS1B01G077900.1	Wheat	nucleus	14.53	20.11
AT3G09670.1	Thale cress	nucleus	18.55	19.7
GSMUA_Achr8P02720_001	Banana	nucleus	21.01	19.26
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	9.21	18.88
Zm00001d041940_P001	Maize	nucleus	20.23	18.42
TraesCS1B01G297600.1	Wheat	nucleus	17.25	17.95
GSMUA_Achr11P...	Banana	nucleus	16.34	17.26
Zm00001d011770_P001	Maize	nucleus	19.84	17.21
PGSC0003DMT400001285	Potato	nucleus	18.29	16.93
KXG34235	Sorghum	nucleus	19.33	16.69
Os05t0463400-01	Rice	nucleus	13.36	16.59
TraesCS1A01G288200.1	Wheat	nucleus	16.34	16.56
TraesCS1D01G287200.1	Wheat	nucleus	16.21	16.47
Bra001301.1-P	Field mustard	nucleus	7.0	15.98
PGSC0003DMT400063505	Potato	nucleus	7.78	15.96
Os11t0303500-01	Rice	nucleus	13.36	14.23
TraesCS1B01G297800.1	Wheat	nucleus	21.79	14.05
TraesCS1D01G287400.1	Wheat	nucleus	21.66	13.88
TraesCS1A01G288400.1	Wheat	nucleus	21.4	13.76
HORVU1Hr1G071590.1	Barley	nucleus	22.18	13.4
Zm00001d038396_P003	Maize	nucleus	23.09	13.19
OQU78150	Sorghum	nucleus	23.48	13.07
PGSC0003DMT400058347	Potato	cytosol	10.51	12.25
PGSC0003DMT400027409	Potato	nucleus	25.81	12.02
GSMUA_Achr5P29300_001	Banana	nucleus	22.83	11.13
PGSC0003DMT400063506	Potato	nucleus	8.3	9.98
Zm00001d010556_P002	Maize	nucleus	22.96	9.54
TraesCS3B01G603700.1	Wheat	nucleus	1.69	6.74
TraesCS3B01G603600.1	Wheat	nucleus	12.97	6.59
HORVU3Hr1G117730.2	Barley	nucleus, plastid	13.75	6.03
TraesCS3D01G543800.1	Wheat	nucleus	10.77	5.42
PGSC0003DMT400069444	Potato	nucleus	7.78	5.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400087303	EnsemblPlantsGene:PGSC0003DMG400036874	EntrezGene:102582027	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom
ncoils:Coil	PANTHER:PTHR42851	PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	PGSC:PGSC0003DMG400036874
RefSeq:XP_015170958.1	SEG:seg	SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI0002964F55	UniProt:M1DDK0
MapMan:35.2	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400036874]

Coordinates

chr9:-:6507936..6510251

Molecular Weight (calculated)

85401.1 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.602

Length

771 amino acids

Sequence
(BLAST)

001: MSVNSDQNCR VVSVDDQSGN ETLMENRNNL DLVCESVIDD GVRVFGEGND VVKGLRVQME GLGVEIDLGP CDLEGEMGFA GYGRLDGELV VDLTGFSHLA
101: RRGNVVEGAD NMQEVSGGTN GSVPDGRTVN INDGMDVGPD AIVPERRGVK HRMEEEGKFY VSDLVWGKVR SHPWWPGQIL DPSAASNSAM KYFKKNCYLI
201: AYFGDQTFAW NEASSIKPFK MYFSRMEKQS NSEHFSHAVN CALDEVSRQV ELGLACPCLP EETRAKMKSQ IVAEAGIQSE SNMRIGGDNF SDQTPFNPTE
301: LVRTLKSVAA APHSRLDRLS FMLAKAQLAA FNRWNGYNEH PVIEEFSDLF ENDNDVEPLL GKKDASDVAS EENSNVQGTS STKRPRCSGI AEHPGKKVKS
401: MSVLVYGSSS RISNDQKKSR GIAGRERKSV SSEKRHLTFE YMPSNSKAKR RKKELSPTSG NKMSLPSHKA ARRNLKSIDR NSRRTSEHNE NSINIGFGDS
501: VLGLVKSEGE QLIPKEFPSP TEMLSKLYSA ARDPMNASSI LLSQASLFCD YRNLTCSETT VSADHSKPTE KHIGQNSSNS ASAETLSIEG IEDSYWTDRI
601: IQCNPEDQVL FEPEVQNEED FPNARWETSP GLSPILDYKQ EVGPLVENSE RENLSDLVDG SSEYSPTTLI LKFSDLESVP PIADLNIIFS QYGPLCESET
701: KLIHKRKQVR VVFKRRADAE TAFSKSGKFS IFGPSLISYR LQYSPSPRKA SCTSKRKRKY AASVAVKGVQ N

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.