Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G060900.1 | Wheat | nucleus | 67.47 | 46.14 |
| HORVU1Hr1G012320.1 | Barley | cytosol, nucleus | 45.16 | 44.68 |
| TraesCS1B01G077900.1 | Wheat | nucleus | 65.32 | 43.63 |
| TraesCS1A01G059600.1 | Wheat | cytosol | 46.51 | 31.63 |
| Os05t0122500-00 | Rice | nucleus | 39.52 | 27.89 |
| EES18937 | Sorghum | nucleus, plastid | 34.68 | 25.49 |
| Zm00001d010984_P001 | Maize | plastid | 33.87 | 24.66 |
| CDY55692 | Canola | nucleus | 19.62 | 16.11 |
| Bra028857.1-P | Field mustard | nucleus | 18.55 | 15.0 |
| CDY04873 | Canola | nucleus | 18.55 | 15.0 |
| KRH32403 | Soybean | nucleus | 22.58 | 12.52 |
| Bra001301.1-P | Field mustard | nucleus | 10.75 | 11.83 |
| AT5G02950.2 | Thale cress | nucleus | 18.82 | 11.08 |
| KRH19811 | Soybean | nucleus | 22.85 | 10.93 |
| PGSC0003DMT400087303 | Potato | nucleus | 22.58 | 10.89 |
| Solyc04g049950.1.1 | Tomato | nucleus | 12.1 | 9.93 |
| CDX73990 | Canola | nucleus | 15.32 | 9.84 |
| KRH34572 | Soybean | nucleus | 21.51 | 9.83 |
| CDY07935 | Canola | nucleus | 14.52 | 9.56 |
| GSMUA_Achr9P04320_001 | Banana | nucleus | 19.35 | 9.42 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 22.31 | 9.35 |
| AT3G09670.1 | Thale cress | nucleus | 17.2 | 8.82 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 17.74 | 8.67 |
| GSMUA_Achr10P... | Banana | nucleus | 15.86 | 8.32 |
| KRH70385 | Soybean | nucleus | 22.04 | 8.08 |
| KRH33337 | Soybean | nucleus | 21.51 | 7.85 |
| GSMUA_Achr11P... | Banana | nucleus | 14.25 | 7.26 |
| TraesCS1A01G288400.1 | Wheat | nucleus | 19.09 | 5.92 |
| TraesCS1A01G089100.1 | Wheat | plastid | 14.52 | 4.98 |
| PGSC0003DMT400027409 | Potato | nucleus | 20.43 | 4.59 |
| KRG92228 | Soybean | nucleus | 21.24 | 4.53 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 22.58 | 4.48 |
| Solyc09g007340.2.1 | Tomato | cytosol | 22.85 | 4.01 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 3.23 | 0.77 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G059700.1 | EnsemblPlantsGene:TraesCS1A01G059700 | PANTHER:PTHR42851 | PANTHER:PTHR42851:SF5 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr1A:-:40912513..40913631
Molecular Weight (calculated)
39367.6 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.138
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPFASAVDA ALGEVARRVD FGLSCDCAIS RGVAKRQVVD NAGVREGAHG AVVDTAFARD AFRGEAFVEY LSALAVAPLA GADRLELTVA TAQLRAFTRW
101: RGTGGLPVYT VWYGIRDVAD GAMGATPARR GRASGTAKRR RPRGDSADGI WKDSRCITCG RARESVEDAQ EVENYEPTTK MGKLMRRAAR RMSLSPPVTR
201: RADRATPTPP ANAAVVTRCT SAAADHAAQL HDVTVTTAAP PPAKPQHKDE QPRLTGLLLN FTGPTAVPPA TDLVDIFSRF GPVVEARPEG FSVAMVIFES
301: SLDAAAAFAG TAKIGALSPN LISFRLAYSL SAPAAQADDS PQSPMNADEM DHLLDEAEGM DLLDLLAVEA LH
101: RGTGGLPVYT VWYGIRDVAD GAMGATPARR GRASGTAKRR RPRGDSADGI WKDSRCITCG RARESVEDAQ EVENYEPTTK MGKLMRRAAR RMSLSPPVTR
201: RADRATPTPP ANAAVVTRCT SAAADHAAQL HDVTVTTAAP PPAKPQHKDE QPRLTGLLLN FTGPTAVPPA TDLVDIFSRF GPVVEARPEG FSVAMVIFES
301: SLDAAAAFAG TAKIGALSPN LISFRLAYSL SAPAAQADDS PQSPMNADEM DHLLDEAEGM DLLDLLAVEA LH
001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.