CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001301.1-P	Field mustard	nucleus	55.44	94.97
CDY07935	Canola	nucleus	61.14	62.65
CDY04873	Canola	nucleus	28.15	35.43
CDY55692	Canola	nucleus	27.29	34.88
AT3G09670.1	Thale cress	nucleus	42.66	34.02
Os05t0463500-01	Rice	nucleus	18.13	22.88
CDY11682	Canola	cytosol, nucleus, plastid	10.02	22.75
CDX67453	Canola	cytosol, nucleus, plastid	10.88	22.34
KRH32403	Soybean	nucleus	22.97	19.82
Os05t0122500-00	Rice	nucleus	16.93	18.6
EES18937	Sorghum	nucleus, plastid	15.72	17.98
Zm00001d010984_P001	Maize	plastid	15.72	17.81
VIT_08s0040g02440.t01	Wine grape	nucleus	27.29	17.79
PGSC0003DMT400087303	Potato	nucleus	22.97	17.25
KRH19811	Soybean	nucleus	23.14	17.22
TraesCS1D01G060800.1	Wheat	cytosol	16.06	17.03
GSMUA_Achr11P...	Banana	nucleus	21.42	16.99
GSMUA_Achr10P...	Banana	nucleus	20.73	16.93
TraesCS1D01G060900.1	Wheat	nucleus	15.72	16.73
TraesCS1B01G077900.1	Wheat	nucleus	16.06	16.7
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	15.72	16.52
TraesCS1B01G077800.1	Wheat	cytosol	15.37	16.15
Os05t0463400-01	Rice	nucleus	16.93	15.78
TraesCS1A01G059600.1	Wheat	cytosol	14.85	15.72
TraesCS1A01G059700.1	Wheat	cytosol	9.84	15.32
CDX86465	Canola	nucleus	13.99	15.31
GSMUA_Achr9P04320_001	Banana	nucleus	19.86	15.05
GSMUA_Achr8P02720_001	Banana	nucleus	21.59	14.86
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	9.67	14.78
HORVU3Hr1G117740.2	Barley	nucleus	4.49	13.54
TraesCS1D01G287200.1	Wheat	nucleus	17.62	13.44
TraesCS1A01G288200.1	Wheat	nucleus	17.62	13.4
TraesCS1B01G297600.1	Wheat	nucleus	16.93	13.23
CDY44440	Canola	plastid	13.3	13.18
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	8.46	13.03
Zm00001d041940_P001	Maize	nucleus	18.13	12.4
Zm00001d011770_P001	Maize	nucleus	18.83	12.26
KXG34235	Sorghum	nucleus	17.44	11.31
TraesCS1B01G297800.1	Wheat	nucleus	21.07	10.2
TraesCS1A01G288400.1	Wheat	nucleus	21.07	10.18
TraesCS1D01G287400.1	Wheat	nucleus	20.9	10.06
CDX99976	Canola	nucleus	16.23	10.04
CDY19729	Canola	nucleus	17.27	9.75
HORVU1Hr1G071590.1	Barley	nucleus	21.24	9.64
CDX67452	Canola	nucleus	8.29	9.62
OQU78150	Sorghum	nucleus	22.45	9.39
Zm00001d038396_P003	Maize	nucleus	21.24	9.11
GSMUA_Achr5P29300_001	Banana	nucleus	22.97	8.41
Os11t0303500-01	Rice	nucleus	10.36	8.29
CDY11681	Canola	nucleus	7.08	8.22
TraesCS3B01G603700.1	Wheat	nucleus	2.42	7.25
HORVU3Hr1G117730.2	Barley	nucleus, plastid	21.76	7.17
TraesCS3B01G603600.1	Wheat	nucleus	18.31	6.99
Zm00001d010556_P002	Maize	nucleus	21.76	6.79
Solyc09g007340.2.1	Tomato	cytosol	23.14	6.32
TraesCS3D01G543800.1	Wheat	nucleus	14.34	5.42
CDY39560	Canola	nucleus	5.35	3.68
CDY48152	Canola	nucleus	4.66	3.03

Protein Annotations

EnsemblPlants:CDX73990	EnsemblPlantsGene:GSBRNA2T00111723001	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	ProteinID:CDX73990	ProteinID:CDX73990.1	SMART:SM00293
SUPFAM:SSF63748	UniParc:UPI0004EDE45A	MapMan:35.2	:	:	:

Description

BnaA03g30570D

Coordinates

chrLK031800:+:825161..826900

Molecular Weight (calculated)

63545.4 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.701

Length

579 amino acids

Sequence
(BLAST)

001: MSTEQESLHP GSDAVDDCDA SEVEVKMSEF SAEPLSGRDQ ELVGCLASSA GDLATEKESV NGGLDLSIEA QNVESEKKKV SGKQGTKAES LDDTESFMAL
101: EPYESKDESA LDNDNAPVRS KVKFLSDSDL VWAKVRSHPW WPGQVFDASA SSEKAKKHFK KGSFLVTYFG DCSFAWNDAT KIKPFRQHFS QLAKQSSLPD
201: FVDAVEVALE EVSRRVEFGL ACSCVGKEVY ERVKSQKVIN PGVREESSKV QGGDKVSSVV FFEPAKLVEY VKGLACAPRY DASDELMFVS QRARLLAFSR
301: WKGFIELPEF ETLQGSLESA PKMKESAPEP KKSTKRRKTE DKDDCKGDGV FEYEDTAVLK KKEEKTLAEF IAEIRLSKSN GKRSLEKKRK VVHSKLTKSA
401: KKMKVNVQTE DSGSQVSLKN DQKVTPKKAK TSFGIGASIL RVANQMHCST TPTGLIPCSK SNGSGKSLQG RSKPEALSER KTSPNETLSS IHSASATKAS
501: NEKANLISID KLQSGEFEHV EDSKLEESGD LKGSSEEQMA NKDKEEAANV VGEMTTEESN LTEEKTTGSV LKEQLVNKN

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.