Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19729 | Canola | nucleus | 70.3 | 64.13 |
| AT5G27650.1 | Thale cress | nucleus | 48.5 | 42.35 |
| AT3G05430.1 | Thale cress | nucleus | 38.14 | 36.99 |
| PGSC0003DMT400063505 | Potato | nucleus | 14.1 | 35.11 |
| KRG96822 | Soybean | nucleus | 34.08 | 29.67 |
| KRH33902 | Soybean | nucleus | 32.48 | 29.09 |
| GSMUA_Achr8P06730_001 | Banana | nucleus | 30.88 | 28.42 |
| KRG92886 | Soybean | nucleus | 31.94 | 28.31 |
| Solyc01g099360.2.1 | Tomato | nucleus | 29.38 | 27.31 |
| GSMUA_Achr3P23960_001 | Banana | nucleus | 28.42 | 25.95 |
| Os05t0149200-01 | Rice | plastid | 9.94 | 24.87 |
| Zm00001d024841_P001 | Maize | nucleus | 22.54 | 24.82 |
| VIT_14s0060g02400.t01 | Wine grape | nucleus | 32.69 | 24.46 |
| CDY55692 | Canola | nucleus | 11.32 | 23.4 |
| CDY04873 | Canola | nucleus | 11.32 | 23.04 |
| CDX67453 | Canola | cytosol, nucleus, plastid | 6.84 | 22.7 |
| Zm00001d010869_P001 | Maize | nucleus | 22.76 | 21.62 |
| CDY11682 | Canola | cytosol, nucleus, plastid | 5.77 | 21.18 |
| OQU77406 | Sorghum | nucleus | 21.9 | 19.94 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 22.22 | 19.1 |
| TraesCS1A01G089100.1 | Wheat | plastid | 22.12 | 19.08 |
| TraesCS1B01G116700.1 | Wheat | plastid | 21.79 | 18.91 |
| TraesCS1D01G097400.1 | Wheat | plastid | 20.3 | 18.23 |
| CDY07935 | Canola | nucleus | 9.94 | 16.46 |
| CDX86465 | Canola | nucleus | 9.19 | 16.26 |
| CDX73990 | Canola | nucleus | 10.04 | 16.23 |
| CDY44440 | Canola | plastid | 9.08 | 14.55 |
| CDX67452 | Canola | nucleus | 7.37 | 13.83 |
| CDY11681 | Canola | nucleus | 7.26 | 13.63 |
| CDY39560 | Canola | nucleus | 6.84 | 7.59 |
| CDY48152 | Canola | nucleus | 6.2 | 6.52 |
Protein Annotations
| EnsemblPlants:CDX99976 | EnsemblPlantsGene:GSBRNA2T00109444001 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | ncoils:Coil |
| PANTHER:PTHR10688 | PANTHER:PTHR10688:SF1 | PFAM:PF00855 | PFscan:PS50812 | ProteinID:CDX99976 | ProteinID:CDX99976.1 |
| SEG:seg | SMART:SM00293 | SUPFAM:SSF63748 | UniParc:UPI0004EF30FA | MapMan:35.2 | : |
Description
BnaC09g03250D
Coordinates
chrLK031916:-:48016..51430
Molecular Weight (calculated)
102733.0 Da
IEP (calculated)
9.289
GRAVY (calculated)
-0.696
Length
936 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEDAEIPQ QSNPIEDPEA NPPLSGDVDS TLDAADSSSS PTELDSSLTN DDDGGADDVA FVEAKRGGGA LEKKPSVTDY KSLLSEFDDY VASEKMGSGV
101: SRALSYGFQV GDLVWGKVKS HPWWPGHIFN EAFASPSVRR MRRVDHVLVA FFGDSSYGWF DPAELIPFEP HLSDKAHQTA AKHFVRAVEE AVDEASRRSA
201: LGLTCKCRNP YNFRATNVHD YFTVDVPDYE VQGVYSGEQI MKARDEFSPV QALSFVKELA LAPQERDDVE ESLAFLKKKA VVCAFRKAVF EEFDETYSQA
301: FGTKSMRTSV TLNEPHNRTP SRAPLSGPLV IAETLGVPKS SKTPTKVKDS KKQDKYLLKR RDEAGDKTLP FGQAEASSST GDSALRRRAS TLQSPMKDEQ
401: PGIVSMDVNS SSAAIPGKES SVPKLSLDEE KDAAEESAER KEERTVVNPE HEPHKQETGP DCGSAGSSLQ PMSESPRGSH TSASEGKSST GSLIKKLKVA
501: KRSSSEMGTS ENPPSEPVKK KKKMKEPNPN LPKKRKHPLS SGEPGAKKLS QLGSAHLHTY MEADVPKLLG HLQDLSLDPF SGSTVVSFGA ARKFFLRFRS
601: LNYQKSLSVS SSDANARDTN LSKPGKSVNR IEDPSKAGKK RLSSDRQDEI PLVKKLKKTY QLKPMASEKK IKLEAKDSVK PAREQSGAVQ ARPSKLQTGK
701: KPAPSAKVVE PTMLVMKFSP GTSLPSPALL KARFGRFGLL DQSAIRVFWK SSTCRVVFLY KADAQTAFRY ATGNNSLFGN VNVRYFLRDV DAPKAEPQEP
801: ENTKEDDEQP QSQMPDQASP RHQPKLPPPL KSNLKSCLKK LGDDTSSNRP RVKFIKKFQN VQLPPSTLPP ILPLPPQYSK PIKTVDHVEP PMPPPPPPSR
901: NFPGDISHQM LNLLSKCNDV VANVTGLLGY VPYHPL
101: SRALSYGFQV GDLVWGKVKS HPWWPGHIFN EAFASPSVRR MRRVDHVLVA FFGDSSYGWF DPAELIPFEP HLSDKAHQTA AKHFVRAVEE AVDEASRRSA
201: LGLTCKCRNP YNFRATNVHD YFTVDVPDYE VQGVYSGEQI MKARDEFSPV QALSFVKELA LAPQERDDVE ESLAFLKKKA VVCAFRKAVF EEFDETYSQA
301: FGTKSMRTSV TLNEPHNRTP SRAPLSGPLV IAETLGVPKS SKTPTKVKDS KKQDKYLLKR RDEAGDKTLP FGQAEASSST GDSALRRRAS TLQSPMKDEQ
401: PGIVSMDVNS SSAAIPGKES SVPKLSLDEE KDAAEESAER KEERTVVNPE HEPHKQETGP DCGSAGSSLQ PMSESPRGSH TSASEGKSST GSLIKKLKVA
501: KRSSSEMGTS ENPPSEPVKK KKKMKEPNPN LPKKRKHPLS SGEPGAKKLS QLGSAHLHTY MEADVPKLLG HLQDLSLDPF SGSTVVSFGA ARKFFLRFRS
601: LNYQKSLSVS SSDANARDTN LSKPGKSVNR IEDPSKAGKK RLSSDRQDEI PLVKKLKKTY QLKPMASEKK IKLEAKDSVK PAREQSGAVQ ARPSKLQTGK
701: KPAPSAKVVE PTMLVMKFSP GTSLPSPALL KARFGRFGLL DQSAIRVFWK SSTCRVVFLY KADAQTAFRY ATGNNSLFGN VNVRYFLRDV DAPKAEPQEP
801: ENTKEDDEQP QSQMPDQASP RHQPKLPPPL KSNLKSCLKK LGDDTSSNRP RVKFIKKFQN VQLPPSTLPP ILPLPPQYSK PIKTVDHVEP PMPPPPPPSR
901: NFPGDISHQM LNLLSKCNDV VANVTGLLGY VPYHPL
0001: MYKTKLIPVM NEDAVIVQQT DSIQDPKVTP DDTVVDSSGD VHEAIDDDVE ASSPMELDSA VTNDARVLES ERSEKDGVVG SEEEDEIKSE DVLIDKDDES
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4D6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.