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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • plastid 3
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG92886 Soybean nucleus 67.46 66.76
KRG96822 Soybean nucleus 44.21 42.98
PGSC0003DMT400063505 Potato nucleus 11.87 32.98
CDX99976 Canola nucleus 29.09 32.48
AT5G27650.1 Thale cress nucleus 33.3 32.46
GSMUA_Achr8P06730_001 Banana nucleus 31.58 32.45
Bra036620.1-P Field mustard nucleus 30.72 31.16
CDY19729 Canola nucleus 30.53 31.09
Solyc01g099360.2.1 Tomato nucleus 29.47 30.59
GSMUA_Achr3P23960_001 Banana nucleus 29.09 29.66
VIT_14s0060g02400.t01 Wine grape nucleus 35.41 29.58
AT3G05430.1 Thale cress nucleus 26.79 29.02
Zm00001d024841_P001 Maize nucleus 23.45 28.82
Os05t0149200-01 Rice plastid 9.86 27.54
Zm00001d010869_P001 Maize nucleus 22.97 24.37
OQU77406 Sorghum nucleus 23.45 23.83
HORVU1Hr1G020500.2 Barley nucleus, plastid 23.64 22.68
TraesCS1B01G116700.1 Wheat plastid 23.35 22.61
TraesCS1A01G089100.1 Wheat plastid 23.06 22.21
TraesCS1D01G097400.1 Wheat plastid 21.63 21.69
KRH32403 Soybean nucleus 11.39 17.73
KRH56588 Soybean nucleus 11.29 16.53
KRH34572 Soybean nucleus 11.2 14.37
KRH19811 Soybean nucleus 10.53 14.14
KRH70385 Soybean nucleus 12.73 13.1
KRH33337 Soybean nucleus 12.25 12.56
KRG94143 Soybean nucleus 11.0 12.41
KRH07190 Soybean nucleus 10.81 12.06
KRG93266 Soybean nucleus 11.39 10.85
KRG92228 Soybean nucleus 12.34 7.39
KRH17636 Soybean nucleus 5.07 7.1
KRG90051 Soybean nucleus 5.07 6.88
Protein Annotations
EMBL:ACUP02006565EnsemblPlants:KRH33902EnsemblPlantsGene:GLYMA_10G152700EntrezGene:100812480Gene3D:2.30.30.140InterPro:IPR000313
InterPro:PWWP_domPANTHER:PTHR10688PANTHER:PTHR10688:SF1PFAM:PF00855PFscan:PS50812ProteinID:KRH33902
ProteinID:KRH33902.1SEG:segSMART:SM00293SUPFAM:SSF63748UniParc:UPI000233CF15UniProt:I1LBA8
MapMan:35.2:::::
Description
hypothetical protein
Coordinates
chr10:-:38733208..38737651
Molecular Weight (calculated)
114072.0 Da
IEP (calculated)
9.653
GRAVY (calculated)
-0.563
Length
1045 amino acids
Sequence
(BLAST)
0001: MSQHHNNHAT LTVSTGDANP DNRLQPVDAP ISTAEHVRVR VSSEDNAAPA SESARFSNSE VNSLLSEFDG YVAAGGASRN VGHGFEIGDM VWGKVKSHPW
0101: WPGHIYNEAF ASSAVRRTKR EGHVLVAFFG DSSYGWFEPS ELIPFDANFA EKSRQISSRN FLKAVEEAVD EASRRCGLGL VCRCRGPGNF RPTDVEGYYS
0201: VQVPDYEPGV YSNAQIRRAM SEFGTVEMLS FVKQLAMNPH GGDPRSIDFT KNRATAFAFR RAVFEQYDET YAQAFGVQPR RPSDSIGNRL DQPVRLPAKA
0301: PLSGPMVIAE TLGGEKKSAT KSVKAKDNSK TDKYLFMRRD EPSNTFQLSS RETSDAAGSY VLQKRPLAVS AVPEALEKHE DTGIMSQDIA ASTVKAEIAV
0401: ADQVQSDGIG HASPEMTRSI EPVEVASKSM GRPHLSGEMA LPNIVNETSQ STNMESKTYI DVKNDGNLTP SGPHEDFQQI EQGFLATSDE VKQVKHHKLN
0501: VDGVPKKIKV HKRPANDLKS ETSGIEGKKK KKMKKGLNLQ PTSGHLEKIS TSEKAVQLSG QSEKSEPMQV DASTSNLMPM DSMAEVNIEL PHLLGDLQAL
0601: ALDPFHGVKR GIPAVTRQFF LRFRSLIYQK SLPVSPPIVT ENEAAEVRRP PSSVGTSDGP DDHARASSLI KPVKHIVRPD DPTKAGRKRA LSDRQEEITE
0701: KRWKKIKNIK ALAAEKKAGG QKTSEARQGD GKESMAQAPP KVVKPELTRK VERPAKAVEP TILVIKFPLE TSLPSVAELK ARFARFGPID QSGLRVFWKT
0801: STCRVVFLHK VDAQSAYKYA LANQSLFGNV GVKCFLREFG DASSEVSEAA KARGDNGANE SPRVKNPAVV QRQSSAQQPL PQPTIQLKSI LKKSTADEPG
0901: QLTGNGGSSK GTPRVKFMLG GEESSRGEQL MVGNRNSFNS VSFADGGAPS SVAMDFNSKN VQKAISQPPL PNTPPPPTQF TKILQHNLHN SEMAPRNTPN
1001: FINATTSATA PTVDISQQMI SLLTRCNDIV NNLTSLLGYV PYHPL
Best Arabidopsis Sequence Match ( AT5G27650.1 )
(BLAST)
0001: MYKTKLIPVM NEDAVIVQQT DSIQDPKVTP DDTVVDSSGD VHEAIDDDVE ASSPMELDSA VTNDARVLES ERSEKDGVVG SEEEDEIKSE DVLIDKDDES
0101: SEVKEEEEEE DGSDDQSSEL GSEADEKELD LGLKEEKKGV SDYKSLLSEF DDYVASEKMG SGVSRALSYG FEVGDLVWGK VKSHPWWPGH IFNEAFASPS
0201: VRRMRRIDHV LVAFFGDSSY GWFDPAELIP FEPNLEEKSQ QTVSKHFVRA VEEAKDEASR RSALGLTCKC RNPYNFRPSN VEDYFAVDVP DYELQAVYSV
0301: DQIKNSRDKF LPAETISFVK QLALAPQECD PDSLKFMKKK AVVFAFRKSV FEEFDETYAQ AFGTKSPRSS VSTLEPHNRA PPRAPLSGPL VIAETLGDLK
0401: SSKKPTKVKV SKKKDKYLLK RRDEAGDKSV QFGEIEASSE ASHIQGIDGS LDGDFGLQRR APTLQTPMKD EKSGIVSMDF ASSNTAIPGK EFSASKPSLD
0501: EEKGLAEKSK ERMEERAAVL PEHGKSEAMA SLKPKEEAGT DLGSAGSSLQ PLLESHTSAS EGKSSTGSVI KKVKVAKRSS SEMSSENPPS EPKKKKKKKK
0601: EPDSDHPVKR KNLYSGEAGA KKLSQLGSAH LQTYMEADVP QLLSHLQDLS LDPFHGLSVA SFGTARKFFL RFRSLNYQKS LSVSSSDATV ENARDTKPSK
0701: PVKTVKRTED PSKAGKKRLS SDRQDEIPSA KKLKKTNQLK SMASEKKIIR EAKDSIKPIR EPSRVVQAKP ARGQTGKKTA PSVKVVEPTM LVMKFPPGTS
0801: LPSAALLKAR FGRFGLLDQS AIRVFWKSST CRVVFLYKAD AQTAFRYATG NNTLFGNVNV KYFLRDVDAP KAEPREPENT KEDDEPQSQW LDQAPPLHQP
0901: TLPPPNVNLK SCLKKPVDDP SSSSNNGNGN RAAVRVKFML GGEENSSKAN TEPPQVTMTL NRNSGPSSSS SSVPMEFVSK KFQNVVHHQQ LPPSTLPPIL
1001: PLPPQYTKPQ QLPIKPVDHV EPPMPPSRNF RGPIPAVSAG DISHQMLNLL SKCNEVVANV TGLLGYVPYH PL
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4D6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.