CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70385	Soybean	nucleus	67.52	67.78
KRH34572	Soybean	nucleus	33.07	41.4
Solyc04g049950.1.1	Tomato	nucleus	14.13	31.79
KRH32403	Soybean	nucleus	18.94	28.76
Os05t0463500-01	Rice	nucleus	11.78	26.14
KRH19811	Soybean	nucleus	19.73	25.84
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	13.54	25.05
Os05t0122500-00	Rice	nucleus	12.46	24.1
GSMUA_Achr9P04320_001	Banana	nucleus	17.96	23.95
HORVU3Hr1G117740.2	Barley	nucleus	4.42	23.44
GSMUA_Achr8P02720_001	Banana	nucleus	19.33	23.42
EES18937	Sorghum	nucleus, plastid	11.48	23.12
GSMUA_Achr10P...	Banana	nucleus	15.7	22.57
Zm00001d010984_P001	Maize	plastid	11.29	22.5
TraesCS1D01G060800.1	Wheat	cytosol	11.97	22.34
TraesCS1B01G077900.1	Wheat	nucleus	12.17	22.26
TraesCS1A01G059600.1	Wheat	cytosol	11.78	21.94
TraesCS1D01G060900.1	Wheat	nucleus	11.58	21.69
TraesCS1B01G077800.1	Wheat	cytosol	11.68	21.6
TraesCS1A01G059700.1	Wheat	cytosol	7.85	21.51
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	7.95	21.37
KRH56588	Soybean	nucleus	14.72	21.01
KRG92228	Soybean	nucleus	35.92	20.97
TraesCS1B01G297600.1	Wheat	nucleus	15.21	20.92
TraesCS1D01G287200.1	Wheat	nucleus	15.41	20.69
TraesCS1A01G288200.1	Wheat	nucleus	14.92	19.97
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	7.26	19.68
Os05t0463400-01	Rice	nucleus	11.78	19.32
PGSC0003DMT400027409	Potato	nucleus	31.31	19.26
VIT_13s0019g03620.t01	Wine grape	nucleus	35.13	19.07
TraesCS1B01G297800.1	Wheat	nucleus	22.28	18.98
KXG34235	Sorghum	nucleus	16.49	18.81
GSMUA_Achr11P...	Banana	nucleus	13.44	18.77
Zm00001d041940_P001	Maize	nucleus	15.01	18.06
Zm00001d011770_P001	Maize	nucleus	15.51	17.77
TraesCS1D01G287400.1	Wheat	nucleus	20.22	17.12
TraesCS1A01G288400.1	Wheat	nucleus	20.12	17.1
KRG94143	Soybean	nucleus	15.51	17.04
KRH07190	Soybean	nucleus	15.51	16.86
HORVU1Hr1G071590.1	Barley	nucleus	21.1	16.85
Zm00001d038396_P003	Maize	nucleus	21.39	16.15
OQU78150	Sorghum	nucleus	21.69	15.96
Os11t0303500-01	Rice	nucleus	10.89	15.33
KRG93266	Soybean	nucleus	16.29	15.13
GSMUA_Achr5P29300_001	Banana	nucleus	23.45	15.11
KRG92886	Soybean	nucleus	12.95	12.5
Zm00001d010556_P002	Maize	nucleus	22.47	12.34
KRH33902	Soybean	nucleus	12.56	12.25
KRG96822	Soybean	nucleus	12.27	11.63
TraesCS3B01G603600.1	Wheat	nucleus	11.78	7.91
TraesCS3B01G603700.1	Wheat	nucleus	1.47	7.77
HORVU3Hr1G117730.2	Barley	nucleus, plastid	12.86	7.46
KRH17636	Soybean	nucleus	4.81	6.57
TraesCS3D01G543800.1	Wheat	nucleus	9.52	6.34
KRG90051	Soybean	nucleus	4.32	5.71

Protein Annotations

EMBL:ACUP02006472	EnsemblPlants:KRH33337	EnsemblPlantsGene:GLYMA_10G116800	EntrezGene:100784689	Gene3D:2.30.30.140	InterPro:IPR000313
InterPro:PWWP_dom	PANTHER:PTHR42851	PANTHER:PTHR42851:SF4	PFAM:PF00855	PFscan:PS50812	ProteinID:KRH33337
ProteinID:KRH33337.1	ProteinID:KRH33338.1	SEG:seg	SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI000233C60F
UniProt:K7LIT1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:29356282..29361539

Molecular Weight (calculated)

111579.0 Da

IEP (calculated)

4.447

GRAVY (calculated)

-0.626

Length

1019 amino acids

Sequence
(BLAST)

0001: MEEQEKGLSG VSETTVTHEE KVRVETLEGS VDCRGVVLME GSFTADLVGE GGACNGKEVM VEVLGSDLYI DGDCTHENGD ELSGGGSIDG GEGLVKDVGS
0101: GGVGGGDSRC LESEEDRSEN VGMELDSVVL GREERDEAVV GSGEVDAPSL LEESVLDSRA QKEVGTEVSN VEDPSVVDVE VECTNAPDAE ASDHEVNNAL
0201: GCLLVGENVQ VSSDTGQGVD KDSTIEEELN KNVSDAEKCG LHKGIEVEAG GQPEAESTKT TNHTSEIEGE DTQIDDQDNL ALMDAGHEEI YDESNIRPNV
0301: EVQTGISEQV GSNGGQEFEV EVEEFIEAEQ RKVEGRVTRR SSLMKSMCLE SLHNARYLLP IEKEGEFSVS DMVWGKVRSH PWWPGQIFDP SDSSEKAMKH
0401: YKKDCHLVAY FGDRTFAWNE ESQLKPFRTH FSSIEKQSTS ESFQNAVDCA VDEVTRRAEY GLACSCIPKD TYDSIKFQTV ENTGIRSELS ARHGVDESLN
0501: ASSFSPGNLV EYLKTLSALP TGGFDRLELE IAKAQLLSFY RFKGYSCLPE LQYCGGFDDD MDSLVHDDEN NHAAPVSKNY GQAGSGNLKN QSSSHRKRKH
0601: NLKDIMHETK KERSLSELMG GTPDSPDGDY WSEEKVIDNL VSPGRSKKRR TVDHYADDFG KPDGRKTISV AKVSNTTKPS FLIGDRIRRV ASKLTGSPST
0701: VKSSGDRSQK TDGSTDGFSG NGTDFSFEEA QRSSMAAPTE YSSLDNLLSS LHLVAQEPLG DYNFLNPIVS FFSDFRNSIV VADDSVKGIF CKEKVGTKRK
0801: KLPPAGLPES FEFDDMSDTY WTDRVIDDGS EVKPVQLSQP AQPSQPARRN RKKDHQLVPA EPGKPVQVSH RPYSKKHYSN NNHIEAPAKP PGYIDENAPA
0901: ELVMNFAELG SVPSETNLNK MFRHFGPLKE AETEVDTVSS RARVVFKKCV DAEVACSSAQ KFNIFGSILV NYQLNYTPSA LFKASSVATT QDQEMHLDLS
1001: NFEVHMIGSV DDDVVAKFG

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.