Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G603700.1 | Wheat | nucleus | 14.58 | 14.51 |
| HORVU1Hr1G012310.1 | Barley | cytosol, nucleus | 26.04 | 13.19 |
| HORVU1Hr1G012320.1 | Barley | cytosol, nucleus | 25.52 | 13.03 |
| Bra028857.1-P | Field mustard | nucleus | 24.48 | 10.22 |
| CDY04873 | Canola | nucleus | 24.48 | 10.22 |
| CDY55692 | Canola | nucleus | 23.44 | 9.93 |
| Zm00001d041940_P001 | Maize | nucleus | 39.58 | 8.97 |
| HORVU1Hr1G071710.17 | Barley | endoplasmic reticulum | 25.52 | 8.89 |
| Os11t0303500-01 | Rice | nucleus | 33.33 | 8.84 |
| Solyc04g049950.1.1 | Tomato | nucleus | 20.83 | 8.83 |
| KXG34235 | Sorghum | nucleus | 40.1 | 8.62 |
| Zm00001d011770_P001 | Maize | nucleus | 39.06 | 8.44 |
| KRH32403 | Soybean | nucleus | 28.12 | 8.05 |
| AT5G02950.2 | Thale cress | nucleus | 23.96 | 7.28 |
| KRH19811 | Soybean | nucleus | 27.6 | 6.81 |
| PGSC0003DMT400087303 | Potato | nucleus | 27.08 | 6.74 |
| GSMUA_Achr9P04320_001 | Banana | nucleus | 24.48 | 6.15 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 26.56 | 5.74 |
| KRH34572 | Soybean | nucleus | 23.96 | 5.65 |
| Bra001301.1-P | Field mustard | nucleus | 8.33 | 4.73 |
| KRH70385 | Soybean | nucleus | 24.48 | 4.63 |
| CDX73990 | Canola | nucleus | 13.54 | 4.49 |
| KRH33337 | Soybean | nucleus | 23.44 | 4.42 |
| AT3G09670.1 | Thale cress | nucleus | 16.15 | 4.27 |
| CDY07935 | Canola | nucleus | 12.5 | 4.25 |
| HORVU1Hr1G071590.1 | Barley | nucleus | 26.56 | 4.0 |
| HORVU1Hr1G020500.2 | Barley | nucleus, plastid | 18.75 | 3.31 |
| GSMUA_Achr11P... | Banana | nucleus | 12.5 | 3.29 |
| KRG92228 | Soybean | nucleus | 25.52 | 2.81 |
| PGSC0003DMT400027409 | Potato | nucleus | 23.44 | 2.72 |
| Solyc09g007340.2.1 | Tomato | cytosol | 28.65 | 2.6 |
| GSMUA_Achr10P... | Banana | nucleus | 9.38 | 2.54 |
| VIT_13s0019g03620.t01 | Wine grape | nucleus | 24.48 | 2.5 |
| HORVU3Hr1G117730.2 | Barley | nucleus, plastid | 15.1 | 1.65 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G117740.2 | EnsemblPlantsGene:HORVU3Hr1G117740 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | ncoils:Coil | PANTHER:PTHR35491 | PANTHER:PTHR35491:SF3 |
| SEG:seg | SUPFAM:SSF54928 | UniParc:UPI000B47544A | UniProt:A0A287MUU7 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:-:699220573..699221151
Molecular Weight (calculated)
20247.7 Da
IEP (calculated)
6.287
GRAVY (calculated)
-0.676
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXKPTKSSP APSEPPVVAD HMKDDYWSDI LINVEEPLSS LVKKKDKGKM RSSKKQRCDD EMKQDEAEAK SQQDKAEAEN GKANGGQASA AEEDASLTGL
101: VLHFSKPGAV PSRGDLIKIF SQYGPVSEVR TETDKHSSSA QVLFRRRMDA EAAFGGAGKI PALRPGLASF RLTDFPCAEA AAAAFLGDDG PK
101: VLHFSKPGAV PSRGDLIKIF SQYGPVSEVR TETDKHSSSA QVLFRRRMDA EAAFGGAGKI PALRPGLASF RLTDFPCAEA AAAAFLGDDG PK
001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
Arabidopsis Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.