Factsheet for Bra028857.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04873	Canola	nucleus	98.91	98.91
AT5G02950.2	Thale cress	nucleus	43.7	31.8
HORVU3Hr1G117740.2	Barley	nucleus	10.22	24.48
KRH32403	Soybean	nucleus	34.13	23.4
Os05t0122500-00	Rice	nucleus	24.57	21.44
Bra001301.1-P	Field mustard	nucleus	15.65	21.3
KRH19811	Soybean	nucleus	35.43	20.95
EES18937	Sorghum	nucleus, plastid	22.83	20.75
PGSC0003DMT400087303	Potato	nucleus	34.13	20.36
TraesCS1D01G060800.1	Wheat	cytosol	24.13	20.33
TraesCS1D01G060900.1	Wheat	nucleus	23.48	19.85
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	23.7	19.78
VIT_08s0040g02440.t01	Wine grape	nucleus	37.61	19.48
TraesCS1B01G077900.1	Wheat	nucleus	23.48	19.39
Zm00001d010984_P001	Maize	plastid	21.3	19.18
TraesCS1A01G059600.1	Wheat	cytosol	22.61	19.01
Os05t0463500-01	Rice	nucleus	18.7	18.74
TraesCS1B01G077800.1	Wheat	cytosol	22.39	18.69
TraesCS1A01G059700.1	Wheat	cytosol	15.0	18.55
GSMUA_Achr9P04320_001	Banana	nucleus	28.7	17.28
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	13.91	16.89
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	13.26	16.22
TraesCS1B01G297600.1	Wheat	nucleus	25.87	16.06
TraesCS1A01G288200.1	Wheat	nucleus	26.3	15.9
Os05t0463400-01	Rice	nucleus	21.09	15.62
GSMUA_Achr8P02720_001	Banana	nucleus	28.26	15.46
Bra025306.1-P	Field mustard	nucleus	17.61	15.31
TraesCS1D01G287200.1	Wheat	nucleus	25.22	15.28
GSMUA_Achr10P...	Banana	nucleus	23.48	15.23
Zm00001d041940_P001	Maize	nucleus	26.09	14.17
GSMUA_Achr11P...	Banana	nucleus	22.39	14.11
Zm00001d011770_P001	Maize	nucleus	25.87	13.39
KXG34235	Sorghum	nucleus	25.65	13.21
Bra028455.1-P	Field mustard	nucleus	24.57	12.71
TraesCS1B01G297800.1	Wheat	nucleus	28.04	10.79
TraesCS1D01G287400.1	Wheat	nucleus	27.61	10.56
Zm00001d038396_P003	Maize	nucleus	30.0	10.22
TraesCS1A01G288400.1	Wheat	nucleus	26.52	10.18
HORVU1Hr1G071590.1	Barley	nucleus	28.04	10.11
OQU78150	Sorghum	nucleus	30.0	9.96
GSMUA_Achr5P29300_001	Banana	nucleus	33.91	9.86
Bra036620.1-P	Field mustard	nucleus	21.96	9.81
Os11t0303500-01	Rice	nucleus	14.57	9.25
Solyc09g007340.2.1	Tomato	cytosol	34.35	7.46
Zm00001d010556_P002	Maize	nucleus	30.0	7.44
TraesCS3B01G603700.1	Wheat	nucleus	2.83	6.74
TraesCS3B01G603600.1	Wheat	nucleus	19.57	5.93
HORVU3Hr1G117730.2	Barley	nucleus, plastid	21.96	5.75
Bra018079.1-P	Field mustard	nucleus	9.78	5.04
TraesCS3D01G543800.1	Wheat	nucleus	16.74	5.03

Protein Annotations

EnsemblPlants:Bra028857.1	EnsemblPlants:Bra028857.1-P	EnsemblPlantsGene:Bra028857	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom
PANTHER:PTHR42851	PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	SEG:seg	SMART:SM00293
SUPFAM:SSF63748	UniParc:UPI00025436A5	UniProt:M4EJ91	MapMan:35.2	:	:

Description

AT5G02950 (E=3e-067) | PWWP domain-containing protein

Coordinates

chrA02:+:1731833..1733215

Molecular Weight (calculated)

51452.3 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.630

Length

460 amino acids

Sequence
(BLAST)

001: MSTDSEADVN ASTFESGESD SESESTGIDA DSQRSKLESL KKVSTDSDLV WGKVSSFPWW PGQVFLDSSV ASKKAKKHFK KGAFLVAYFG DCSFAWNDAS
101: KIKPFHRHFS QMAEQSDSPE FRNAVGCALE EVSRRVECGL SCGCVTEEAY ERVETQRVMN AGIREESRVR YGGDEVSSAG LFEPAKVVEY MKRLACFPRY
201: DESDELVFVS NRARLFAFQQ WRSCINFPMY ETFLKDVSDA KREEKTLSDC IADKRVGKKR KVESLESGKP EKKIKKVTEP CFLMGAIPLR MESEMMTHTL
301: SLKRTPQPLN LEHSNYEDFE KFIEETCCSN LNQDSEKASI PSDVKESSEQ PESGSKEQTG VKDCSGDSSA APNALILKFA SSGSVPSEEK LNSIFNRYGP
401: LRESETRVMK KGKKARVVFR RGEDAETAFS SSGKYSIFGP SLLSYSLKYV GPKAKESNMI

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.