Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55692 | Canola | nucleus | 33.07 | 46.14 |
| Bra028857.1-P | Field mustard | nucleus | 31.8 | 43.7 |
| CDY04873 | Canola | nucleus | 31.8 | 43.7 |
| KRH32403 | Soybean | nucleus | 27.22 | 25.63 |
| AT3G09670.1 | Thale cress | nucleus | 27.85 | 24.24 |
| HORVU3Hr1G117740.2 | Barley | nucleus | 7.28 | 23.96 |
| PGSC0003DMT400087303 | Potato | nucleus | 28.96 | 23.74 |
| Os05t0122500-00 | Rice | nucleus | 18.51 | 22.2 |
| KRH19811 | Soybean | nucleus | 27.22 | 22.11 |
| EES18937 | Sorghum | nucleus, plastid | 17.56 | 21.94 |
| HORVU1Hr1G071710.17 | Barley | endoplasmic reticulum | 18.2 | 20.87 |
| VIT_08s0040g02440.t01 | Wine grape | nucleus | 29.11 | 20.72 |
| TraesCS1D01G060800.1 | Wheat | cytosol | 17.72 | 20.51 |
| Os05t0463500-01 | Rice | nucleus | 14.72 | 20.26 |
| Zm00001d010984_P001 | Maize | plastid | 16.14 | 19.96 |
| TraesCS1A01G059600.1 | Wheat | cytosol | 16.93 | 19.56 |
| TraesCS1D01G060900.1 | Wheat | nucleus | 16.61 | 19.3 |
| TraesCS1B01G077800.1 | Wheat | cytosol | 16.77 | 19.24 |
| HORVU1Hr1G012310.1 | Barley | cytosol, nucleus | 11.39 | 19.0 |
| TraesCS1A01G059700.1 | Wheat | cytosol | 11.08 | 18.82 |
| TraesCS1B01G077900.1 | Wheat | nucleus | 16.46 | 18.67 |
| GSMUA_Achr9P04320_001 | Banana | nucleus | 22.31 | 18.46 |
| GSMUA_Achr8P02720_001 | Banana | nucleus | 24.53 | 18.43 |
| GSMUA_Achr10P... | Banana | nucleus | 19.94 | 17.77 |
| Zm00001d041940_P001 | Maize | nucleus | 23.73 | 17.71 |
| HORVU1Hr1G012320.1 | Barley | cytosol, nucleus | 10.13 | 17.02 |
| KXG34235 | Sorghum | nucleus | 23.73 | 16.8 |
| TraesCS1D01G287200.1 | Wheat | nucleus | 20.09 | 16.73 |
| TraesCS1B01G297600.1 | Wheat | nucleus | 19.46 | 16.6 |
| TraesCS1A01G288200.1 | Wheat | nucleus | 19.78 | 16.43 |
| Zm00001d011770_P001 | Maize | nucleus | 22.94 | 16.31 |
| GSMUA_Achr11P... | Banana | nucleus | 18.2 | 15.75 |
| Os05t0463400-01 | Rice | nucleus | 15.19 | 15.46 |
| AT3G27860.1 | Thale cress | nucleus | 13.77 | 13.34 |
| TraesCS1D01G287400.1 | Wheat | nucleus | 23.89 | 12.55 |
| Os11t0303500-01 | Rice | nucleus | 14.08 | 12.29 |
| TraesCS1B01G297800.1 | Wheat | nucleus | 22.94 | 12.12 |
| AT5G40340.1 | Thale cress | nucleus | 18.99 | 11.9 |
| AT5G27650.1 | Thale cress | nucleus | 19.78 | 11.66 |
| TraesCS1A01G288400.1 | Wheat | nucleus | 21.84 | 11.51 |
| AT3G05430.1 | Thale cress | nucleus | 17.56 | 11.5 |
| HORVU1Hr1G071590.1 | Barley | nucleus | 22.78 | 11.29 |
| Zm00001d038396_P003 | Maize | nucleus | 24.05 | 11.26 |
| OQU78150 | Sorghum | nucleus | 23.58 | 10.76 |
| GSMUA_Achr5P29300_001 | Banana | nucleus | 26.42 | 10.56 |
| Solyc09g007340.2.1 | Tomato | cytosol | 29.11 | 8.68 |
| Zm00001d010556_P002 | Maize | nucleus | 22.94 | 7.81 |
| TraesCS3B01G603700.1 | Wheat | nucleus | 2.22 | 7.25 |
| HORVU3Hr1G117730.2 | Barley | nucleus, plastid | 17.88 | 6.43 |
| TraesCS3B01G603600.1 | Wheat | nucleus | 15.35 | 6.39 |
| AT3G48187.1 | Thale cress | nucleus | 7.75 | 5.79 |
| TraesCS3D01G543800.1 | Wheat | nucleus | 12.97 | 5.36 |
Protein Annotations
| Gene3D:2.30.30.140 | MapMan:35.2 | EntrezGene:831728 | EMBL:AB493732 | ProteinID:AED90539.1 | ProteinID:ANM68804.1 |
| ArrayExpress:AT5G02950 | EnsemblPlantsGene:AT5G02950 | RefSeq:AT5G02950 | TAIR:AT5G02950 | RefSeq:AT5G02950-TAIR-G | EnsemblPlants:AT5G02950.2 |
| Unigene:At.50421 | ProteinID:CAB86049.1 | GO:GO:0003674 | GO:GO:0008150 | InterPro:IPR000313 | RefSeq:NP_001330526.1 |
| RefSeq:NP_195915.1 | PFAM:PF00855 | PFscan:PS50812 | PANTHER:PTHR42851 | PANTHER:PTHR42851:SF2 | InterPro:PWWP_dom |
| UniProt:Q9LYZ0 | SMART:SM00293 | SUPFAM:SSF63748 | UniParc:UPI000009D348 | SEG:seg | : |
Description
Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
Coordinates
chr5:+:690685..693099
Molecular Weight (calculated)
70515.4 Da
IEP (calculated)
6.591
GRAVY (calculated)
-0.725
Length
632 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.