CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04873	Canola	nucleus	79.25	78.04
AT5G02950.2	Thale cress	nucleus	46.14	33.07
CDX73990	Canola	nucleus	34.88	27.29
CDY07935	Canola	nucleus	33.33	26.73
CDY11682	Canola	cytosol, nucleus, plastid	14.13	25.1
KRH32403	Soybean	nucleus	35.76	24.14
HORVU3Hr1G117740.2	Barley	nucleus	9.93	23.44
CDX67453	Canola	cytosol, nucleus, plastid	14.13	22.7
Os05t0122500-00	Rice	nucleus	25.17	21.63
KRH19811	Soybean	nucleus	36.64	21.34
PGSC0003DMT400087303	Potato	nucleus	35.32	20.75
EES18937	Sorghum	nucleus, plastid	23.18	20.75
TraesCS1D01G060900.1	Wheat	nucleus	24.5	20.4
TraesCS1B01G077900.1	Wheat	nucleus	24.72	20.11
TraesCS1A01G059700.1	Wheat	cytosol	16.11	19.62
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	23.62	19.42
VIT_08s0040g02440.t01	Wine grape	nucleus	37.75	19.26
TraesCS1D01G060800.1	Wheat	cytosol	23.18	19.23
Os05t0463500-01	Rice	nucleus	19.21	18.95
TraesCS1A01G059600.1	Wheat	cytosol	22.3	18.46
Zm00001d010984_P001	Maize	plastid	20.75	18.4
TraesCS1B01G077800.1	Wheat	cytosol	21.85	17.97
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	14.79	17.68
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	14.13	17.02
GSMUA_Achr9P04320_001	Banana	nucleus	28.7	17.02
GSMUA_Achr8P02720_001	Banana	nucleus	30.24	16.29
TraesCS1B01G297600.1	Wheat	nucleus	26.05	15.92
TraesCS1A01G288200.1	Wheat	nucleus	26.49	15.77
GSMUA_Achr10P...	Banana	nucleus	23.84	15.23
CDX86465	Canola	nucleus	17.66	15.12
TraesCS1D01G287200.1	Wheat	nucleus	25.17	15.02
Os05t0463400-01	Rice	nucleus	20.09	14.65
GSMUA_Achr11P...	Banana	nucleus	22.96	14.25
Zm00001d011770_P001	Maize	nucleus	27.15	13.84
Zm00001d041940_P001	Maize	nucleus	25.83	13.81
KXG34235	Sorghum	nucleus	26.49	13.44
CDY44440	Canola	plastid	15.89	12.33
CDY11681	Canola	nucleus	12.8	11.62
CDX99976	Canola	nucleus	23.4	11.32
CDX67452	Canola	nucleus	12.36	11.22
TraesCS1B01G297800.1	Wheat	nucleus	27.59	10.45
TraesCS1D01G287400.1	Wheat	nucleus	26.93	10.14
Zm00001d038396_P003	Maize	nucleus	29.14	9.78
TraesCS1A01G288400.1	Wheat	nucleus	25.83	9.76
CDY19729	Canola	nucleus	22.08	9.75
HORVU1Hr1G071590.1	Barley	nucleus	27.37	9.72
Os11t0303500-01	Rice	nucleus	15.45	9.67
GSMUA_Achr5P29300_001	Banana	nucleus	33.33	9.54
OQU78150	Sorghum	nucleus	28.7	9.39
Solyc09g007340.2.1	Tomato	cytosol	35.1	7.5
Zm00001d010556_P002	Maize	nucleus	28.7	7.0
TraesCS3B01G603700.1	Wheat	nucleus	2.87	6.74
TraesCS3B01G603600.1	Wheat	nucleus	18.98	5.67
HORVU3Hr1G117730.2	Barley	nucleus, plastid	21.63	5.58
CDY39560	Canola	nucleus	9.71	5.22
CDY48152	Canola	nucleus	9.93	5.06
TraesCS3D01G543800.1	Wheat	nucleus	15.67	4.64

Protein Annotations

EnsemblPlants:CDY55692	EnsemblPlantsGene:GSBRNA2T00017198001	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	ProteinID:CDY55692	ProteinID:CDY55692.1	SEG:seg
SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI0004EEDCF7	UniProt:A0A078IYZ6	MapMan:35.2	:

Description

BnaC02g03440DBnaC02g03440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYZ6]

Coordinates

chrLK033421:+:32837..34198

Molecular Weight (calculated)

50475.3 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.605

Length

453 amino acids

Sequence
(BLAST)

001: MSPTDSEADL NVNASTFESG ESDSESESTG LDSQRSKLES LKKLSTDSDL VWGKVSSFPW WPGQVFLDSS VASKKAKKHF KKGAFLVAYF GDCSFAWNDA
101: SKIKPFRQHF SQMVEQSDSP EFRNAVGCAL EEVSRRVEFG LSCGCVSQEA YERVKTQSVM NAGIREESRV RYGGDEASSA GLFEPAKLVE YMKRLACCPR
201: YDESDDKLVF VSNRAQLFAF QQWRSCINFP FLKDVTDAKR EEKTLSDCSV DKRVGKKRKV ESLESCKPEK KIKKCFLMGA IPLRMESEMM THTLSLKRTP
301: QPLNLEHSNY EDFEKFLEET CCSNLNQDSE KASIPSDVKE SSGSKEAQTG LKDCSGDSSA APNALILKFA SSGSVPSEEK LNSIFNSYGP LREAETRVMK
401: KGKKARVVFK RGEDAETAFS SSGKYSIFGP SLLSYSLKYV GHKGKESNDI ITQ

Best Arabidopsis Sequence Match ( AT5G02950.1 )
(BLAST)

001: MSTEPEGVES DSNADFAINA SSFDYGMAHT SETLADPMSF QAQDLVVNLT GVERKVFVSA RDDKDSLCNG VDFDADSDLL KNKDKKGFSK ENLKLFDSDL
101: VWAKLRSYPW WPGLVFDKSV ASKAAMRHFK KGNVLVAYFG DCTFAWNNAS QIKPFHQNFS QMQEQSNSAE FRDAIDCALD EVSRRVEFGL SCSCVSEEAY
201: NKLKTQNIIN AGIREDSSVR YGGDKLSDGI SFEPAKLVDY MKHLACFPCY DATEKLQFVI NRAQVLAFQQ WKDYSHFIDY ETFVRSVESA ATLASLPEVN
301: MDEGISAKKR KTDYKDNAEQ TKEKTLSDLT VKKRCGSRST EKLDGKSHSE KKRKVESSES GKSEKRIKKS QQKEDSVSKH SNEESLLSVG DTNKLQKTAE
401: PCHGTGVENE MNSLTPTLKP CRASKSTEVE NEKTKKPRHQ ELAERKISSP DEMLSSLHAA NTSTGIPDSI NIDPSNYEDF EKFINELFCS KLNGDSKKAS
501: ITETSEPCDK KDSAEEEILP ANKEITGSGS KEQIGLKDCS ADSLPPYALV LNFADSGSVP SEEKLNEIFK RYGPLHESKT KVTMKGKRAK VVFKRGEDAK
601: TAFSSAGKYS IFGPSLLSYR LEYVCPKRKK TT

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYZ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.