CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73990	Canola	nucleus	62.65	61.14
CDY04873	Canola	nucleus	27.79	34.13
CDY55692	Canola	nucleus	26.73	33.33
AT3G09670.1	Thale cress	nucleus	41.95	32.64
CDY11682	Canola	cytosol, nucleus, plastid	10.44	23.14
CDX67453	Canola	cytosol, nucleus, plastid	11.33	22.7
Os05t0463500-01	Rice	nucleus	17.17	21.13
KRH32403	Soybean	nucleus	23.54	19.82
Zm00001d010984_P001	Maize	plastid	17.17	18.98
Os05t0122500-00	Rice	nucleus	16.99	18.22
KRH19811	Soybean	nucleus	24.78	17.99
TraesCS1D01G060800.1	Wheat	cytosol	16.99	17.58
EES18937	Sorghum	nucleus, plastid	15.58	17.39
GSMUA_Achr10P...	Banana	nucleus	21.42	17.07
TraesCS1B01G077800.1	Wheat	cytosol	16.46	16.88
TraesCS1A01G059600.1	Wheat	cytosol	16.28	16.82
TraesCS1D01G060900.1	Wheat	nucleus	15.93	16.54
HORVU1Hr1G071710.17	Barley	endoplasmic reticulum	16.11	16.52
GSMUA_Achr9P04320_001	Banana	nucleus	22.12	16.36
PGSC0003DMT400087303	Potato	nucleus	22.12	16.21
TraesCS1B01G077900.1	Wheat	nucleus	15.75	15.98
VIT_08s0040g02440.t01	Wine grape	nucleus	24.96	15.88
GSMUA_Achr11P...	Banana	nucleus	19.82	15.34
HORVU1Hr1G012310.1	Barley	cytosol, nucleus	10.09	15.04
GSMUA_Achr8P02720_001	Banana	nucleus	21.95	14.74
TraesCS1A01G059700.1	Wheat	cytosol	9.56	14.52
Os05t0463400-01	Rice	nucleus	15.93	14.49
CDX86465	Canola	nucleus	13.1	13.99
TraesCS1B01G297600.1	Wheat	nucleus	17.17	13.09
TraesCS1D01G287200.1	Wheat	nucleus	17.52	13.04
CDY44440	Canola	plastid	13.27	12.84
HORVU1Hr1G012320.1	Barley	cytosol, nucleus	8.5	12.77
TraesCS1A01G288200.1	Wheat	nucleus	17.17	12.75
HORVU3Hr1G117740.2	Barley	nucleus	4.25	12.5
Zm00001d011770_P001	Maize	nucleus	19.65	12.49
Zm00001d041940_P001	Maize	nucleus	18.58	12.4
KXG34235	Sorghum	nucleus	18.76	11.87
TraesCS1B01G297800.1	Wheat	nucleus	23.36	11.04
TraesCS1D01G287400.1	Wheat	nucleus	22.83	10.72
TraesCS1A01G288400.1	Wheat	nucleus	21.77	10.26
HORVU1Hr1G071590.1	Barley	nucleus	22.48	9.95
CDX99976	Canola	nucleus	16.46	9.94
CDY19729	Canola	nucleus	16.81	9.26
CDX67452	Canola	nucleus	7.96	9.02
OQU78150	Sorghum	nucleus	21.77	8.88
Zm00001d038396_P003	Maize	nucleus	20.89	8.74
Os11t0303500-01	Rice	nucleus	11.15	8.7
CDY11681	Canola	nucleus	7.26	8.22
GSMUA_Achr5P29300_001	Banana	nucleus	22.3	7.96
TraesCS3B01G603700.1	Wheat	nucleus	2.48	7.25
TraesCS3B01G603600.1	Wheat	nucleus	17.88	6.66
HORVU3Hr1G117730.2	Barley	nucleus, plastid	20.18	6.49
Zm00001d010556_P002	Maize	nucleus	21.24	6.47
Solyc09g007340.2.1	Tomato	cytosol	21.77	5.8
TraesCS3D01G543800.1	Wheat	nucleus	13.81	5.1
CDY39560	Canola	nucleus	6.19	4.15
CDY48152	Canola	nucleus	5.66	3.6

Protein Annotations

EnsemblPlants:CDY07935	EnsemblPlantsGene:GSBRNA2T00125139001	Gene3D:2.30.30.140	InterPro:IPR000313	InterPro:PWWP_dom	PANTHER:PTHR42851
PANTHER:PTHR42851:SF2	PFAM:PF00855	PFscan:PS50812	ProteinID:CDY07935	ProteinID:CDY07935.1	SEG:seg
SMART:SM00293	SUPFAM:SSF63748	UniParc:UPI0004EEC9DC	UniProt:A0A078F0G9	MapMan:35.2	:

Description

BnaC03g35880DBnaC03g35880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F0G9]

Coordinates

chrLK031982:+:197335..199311

Molecular Weight (calculated)

62448.2 Da

IEP (calculated)

7.426

GRAVY (calculated)

-0.776

Length

565 amino acids

Sequence
(BLAST)

001: MSTEQERLPS VSSDASDDCK ASRVEAKMSD LPAQELDGDE QEVTKESEKK EVSVNCKEAN GEKDSGGIQT KLLVDKEGSD GSGTKAESLI DMDSFMALEP
101: YESKNESPLD NNGNAPVRSK VKFLSDSDLV WAKVRSHPWW PGQVFDASAS SDKAKKHFKK GSFLVTYFGD CSYAWNDATK IKPFRQHFSQ LAKQSSLPDF
201: VDAVGFALEE VSRRIEFGLA CSCVGKEVFE RVKTQKVINP GVREESSRVQ GGDKVSSAVF FEPGSLVEYV KGLACYPRYD ASDELMFVSQ RARLLAFSRW
301: KGFIELPEFE TLRGSVESAP KMKESAPEPK KSTKRRKTED KDHCERDGVF EYEDTIVLKK KKKEKTLAEF IAEIRLSKSN GKRSHGEKKR MVVDTKPTKS
401: AKKMKTNLQK EDSGSPVSPK NDQKITPKKA KTCFGIGASI LRVANQMHCS TTPTGLVPCS KNNGSGEPSP SKSLSSRHSA STTKASSGKP NPISKDKLQS
501: GELEHVVKET ASTNIVEDSV VLESRDLKDD EQMVNEEDRK EAENIVGETT VVDSSNLTEQ LVNKN

Best Arabidopsis Sequence Match ( AT3G09670.1 )
(BLAST)

001: MSTESERIES VSEANASSLE VGNDQMSEAL AGQAQELKTI GDDKEGCGNF ASAGDNGMEK VNGFTNLVKE TESVNGELDL GTRTENVGGE SNQSDKKVLV
101: DSEEVMMVEK RGLLVEKEVE PDMVCSHGAD LSDVKVSDGR LDSEDLVQDR KPDGLEKQGT KVEDLDVVCF MGLEPHESKD ESILDDEIAH VAAKVKISDS
201: DLVWAKVRSH PWWPGQVFDA SAATDKAKKH FKKGSFLVTY FGDCTFAWNE ASRIKPFRQH FSQMAKQSSL PDFIDAIDFA LEEVSRRIEF GLACSCISEE
301: VYQKIKTQNV INPGIREDSS SIHGGDKVSS AVFFEPANLV GYVKRLACSP SYDATDALQL VSQRAQLLAF NRWKGYTDLP EFMTLQGSVE SAPKISPAEE
401: QSSLVEVSDP EPTKSKQVYT KRRKTNLQTE QSSLVEVSDP DKGDCKHDGV FEYEETIVPK KKEKTLAEFI AEKRVSRHNG NTSHEKSGNV PHCEKKRKVV
501: QSKVPKSTKK IKANLQTEDP GSPVSPKNDR KNNLSAGDKI TPQKARKSFG IGASILKVAN QMHCSTPTRL LPCSDSTSKK AAKSNGSGKS LQEKPKAEAL
601: SAREISPSTT LSSPHAASVT KTTSGKSNSV SLDHNLSGEL DQVRKEAPST NLVEDPMLES RDLKDSSKEQ VVHEDKKEAA NVADEKSIMD SNLTGEKISG
701: LDLREQPSNK NCSGGSDSCK EDVSAE

Arabidopsis Description

Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.