Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018079.1-P | Field mustard | nucleus | 72.24 | 68.2 |
| CDY48152 | Canola | nucleus | 62.75 | 59.44 |
| AT3G48187.1 | Thale cress | nucleus | 33.57 | 33.45 |
| PGSC0003DMT400069444 | Potato | nucleus | 18.15 | 13.36 |
| Solyc06g071490.1.1 | Tomato | nucleus | 17.68 | 13.13 |
| KRH17636 | Soybean | nucleus | 9.96 | 11.26 |
| CDY11681 | Canola | nucleus | 6.17 | 10.42 |
| CDY04873 | Canola | nucleus | 5.34 | 9.78 |
| CDY55692 | Canola | nucleus | 5.22 | 9.71 |
| KRG90051 | Soybean | nucleus | 8.66 | 9.48 |
| CDX67452 | Canola | nucleus | 5.58 | 9.42 |
| CDX99976 | Canola | nucleus | 7.59 | 6.84 |
| CDX86465 | Canola | nucleus | 4.03 | 6.43 |
| CDY07935 | Canola | nucleus | 4.15 | 6.19 |
| CDY19729 | Canola | nucleus | 7.47 | 6.14 |
| CDY44440 | Canola | plastid | 4.03 | 5.82 |
| CDX73990 | Canola | nucleus | 3.68 | 5.35 |
| CDX67453 | Canola | cytosol, nucleus, plastid | 1.3 | 3.9 |
| CDY11682 | Canola | cytosol, nucleus, plastid | 0.83 | 2.75 |
| TraesCS3A01G538200.1 | Wheat | nucleus | 1.3 | 0.7 |
Protein Annotations
| EnsemblPlants:CDY39560 | EnsemblPlantsGene:GSBRNA2T00068108001 | Gene3D:2.30.30.140 | InterPro:IPR000313 | InterPro:PWWP_dom | PANTHER:PTHR10688 |
| PANTHER:PTHR10688:SF3 | PFAM:PF00855 | PFscan:PS50812 | ProteinID:CDY39560 | ProteinID:CDY39560.1 | SEG:seg |
| SUPFAM:SSF63748 | UniParc:UPI0004EF43A9 | UniProt:A0A078HM75 | MapMan:35.1 | : | : |
Description
BnaCnng09290DBnaCnng09290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM75]
Coordinates
chrLK032452:+:57450..60044
Molecular Weight (calculated)
92124.5 Da
IEP (calculated)
9.227
GRAVY (calculated)
-0.486
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MKASMEEDDE CLTLGGGGGG DKVRKIEVSG GNISLVVDFS GSLTGASSHN ALESNGSCLK ENQTQESLVG NLVWAMTKSK KWWPGEVVGY KADAKESSFM
101: VRYLGEGQLE SWCAPSKLRP FKESFERLAS QRNDVGFFVA VEEAMTLLRN SLRLEMTCSC MSERNGKKPA RKTKPLILRD FSLDRLEPKE FVTRLKNLAE
201: CVSSGGILEA TVMQSRLSAF YSFCGHKQIP MDQLNQNEAR RSFNGSKMEE SEFVGSPSVV AGSRRRKFRK EWFRKFVSEV DNVSAREDLV DTSPSDLVSK
301: LKLLAVDSST CSEEAENVGL FEWFFSKFRI SVFHDENSYR MQLANMAGFN DLMVAKAANP GTELRTSKSK NVGKSKIGPF CGVSVAGAEQ KTFESQKIPE
401: KSKIELIGCV SVSDTEQKIS ESHENSERSK MEVIGGVSVA NTEQKTFELQ KNSEKSKIEV VGGVSVADAD QKANIRAEKY RTYHRASKPK MPGLKTIKDT
501: ISRSDFSSSV ANEPSLQGKA CMADTLSRPA ATLVPDLNSG GNALASAESD HLQKPETLVP PSPLPQKEER PFSVMLNFQA AAAVAAAAPR SIYGASGTGY
601: VSSLTDLERR FTSADLCAKV TGTEKKKRGR KRKNPEAAHA TNGIPDLNGT TKEPASVPPQ AEPTQRRKRR KKEEMPNRST RGITVLVLKF SSKESMPSKD
701: DLTSIFSAFG PLDASEIHVY EELSGAEVAF VSSGDAVEAV KSLDKANPFG ENLVSFRLQP KLINVYRNIA PSMPAISHVS PLQKPKNPPI SVESMKQNLL
801: MMTAMLDKSG DHLSRETKAK LKSDISALLE KISSMPSSSS SSS
101: VRYLGEGQLE SWCAPSKLRP FKESFERLAS QRNDVGFFVA VEEAMTLLRN SLRLEMTCSC MSERNGKKPA RKTKPLILRD FSLDRLEPKE FVTRLKNLAE
201: CVSSGGILEA TVMQSRLSAF YSFCGHKQIP MDQLNQNEAR RSFNGSKMEE SEFVGSPSVV AGSRRRKFRK EWFRKFVSEV DNVSAREDLV DTSPSDLVSK
301: LKLLAVDSST CSEEAENVGL FEWFFSKFRI SVFHDENSYR MQLANMAGFN DLMVAKAANP GTELRTSKSK NVGKSKIGPF CGVSVAGAEQ KTFESQKIPE
401: KSKIELIGCV SVSDTEQKIS ESHENSERSK MEVIGGVSVA NTEQKTFELQ KNSEKSKIEV VGGVSVADAD QKANIRAEKY RTYHRASKPK MPGLKTIKDT
501: ISRSDFSSSV ANEPSLQGKA CMADTLSRPA ATLVPDLNSG GNALASAESD HLQKPETLVP PSPLPQKEER PFSVMLNFQA AAAVAAAAPR SIYGASGTGY
601: VSSLTDLERR FTSADLCAKV TGTEKKKRGR KRKNPEAAHA TNGIPDLNGT TKEPASVPPQ AEPTQRRKRR KKEEMPNRST RGITVLVLKF SSKESMPSKD
701: DLTSIFSAFG PLDASEIHVY EELSGAEVAF VSSGDAVEAV KSLDKANPFG ENLVSFRLQP KLINVYRNIA PSMPAISHVS PLQKPKNPPI SVESMKQNLL
801: MMTAMLDKSG DHLSRETKAK LKSDISALLE KISSMPSSSS SSS
001: MKLQNPDKKT LREGFSQESS VVALDSGVLA MSGLKCDGKF PVKDVLMEEG GDKVRKIQVS GGNISLVVDF SGARTSSNNF FESNASCVNE NLVKGNGYRE
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
101: DETQEFLVGN LVWVMTKYKK WWPGEVVDFK ADAKESFMVR SIGQSHLVSW FASSKLKPFK ESFEQVLNQR NDNGFFDALQ KAMSLLSNSL KLDMTCSCIA
201: DGNGIVSAQN ITTRKNKPLI LREFSVDRLE PKEFVTQLKN IAKCVLNAGV LESTVMQSQL SAFYTLFGHK QIPMAQLHEN EGRKSFTAKM SDSKFIGSPS
301: ICAGNSRKRF RKEWFRKFVS EVDNVSARDD LVNVPPSDLI SKLKLLAVGY NCSEETENIG LFEWFFSKFR ISVYHDENAY KMQLANMAGF KDLMLATNAN
401: RGTVQKTLKS KKIGKSKMEP LNGVSVADTE QKTFELQISK KSNIESLNGV SVADTEQKTF ELQILEKSNI ESLNGVSTPN IDHEASKSNN SGKTKINHII
501: GHSNFPSSVA KVQLAKDFQD KLLVQAPDRK AMTADTLSRP AAILVPDLNS GGNALGTAEF DHMQRPETLI QHNVCPQEEK TPRSTILNFQ VTAHQGVSGT
601: QFVSSQPTSY KHFTSADLFT YSGKKKRGRK RKNAEELPIV AHASATTGIP DLNGTNTEPT LVLPQVEPTQ RRRRRKKEES PNGLTRGITI LFLKFSSQVS
701: MPSRDDLTST FSAFGPLDSS ETHVSEEFSG AQVAFVSSAD AIEAVKSLEK ANPFGETLVN FRLQQKLITV QRNIAPRMPV ISHVSPVPKP NNIPTSMDAM
801: RQNLLMMTAM LEKSGDSLSR ETKAKLKSEI TGLLEKVSSI PSSSSS
Arabidopsis Description
Serine/Threonine-kinase ATM [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTU3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.